Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_06s0004g04860.t01
CDS Infomation

cds chromosome:12X:6:5816980:5819572:-1 gene:VIT_06s0004g04860 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expansin [Source:UniProtKB/TrEMBL;Acc:F6GV05]
Sequence

ATGGCTGTGGGCGTTGTGGTCTGCTTTGCTTCCCTTATCTCGTTATTCTCACTCGTTCAA
GCTAAAATTCCTGGCGCCTACTCCGGCGGTGCTTGGCAGAGTGCTCACGCCACCTTCTAC
GGTGGCAGTGACGCCTCTGGCACTATGGGTGGAGCTTGTGGATACGGTAACCTTTACAGC
CAAGGGTACGGCGTGAACACAGCTGCACTGAGCACAGCACTCTTCAACAATGGACTCAGT
TGCGGCGCTTGTTTCGAACTCAAGTGCGCCAATGACCCCACGTGGTGCCACTCCGGCAGC
CCCTCCATTCTTATCACCGCTACCAACTTCTGCCCACCAAACTATGCTCTTCCCAGCGAC
AATGGCGGCTGGTGCAACCCTCCCCGCCCCCACTTCGATCTCGCCATGCCCATGTTCCTC
AAGATCGCTGAGTATCGTGCCGGGATCGTCCCCGTGGCTTTCCGCCGGGTGCCGTGCCGT
AAGCAAGGAGGGATTAGGTTCACGATCAACGGCTTCCGGTACTTCAATCTGGTTCTGATC
ACCAACGTGGCAGGCGCAGGGGATATCGTGAGGGCGAGCGTAAAAGGGTCGAAGACAGGG
TGGATGAGCCTGAGCAGGAACTGGGGTCAAAACTGGCAGTCAAACGCAGTGCTGGTGGGG
CAATCGCTGTCGTTCAGAGTCACGGGGAGTGACAGGCGCACATCAACATCCTGGAACATC
GCACCAGCGCATTGGCAGTTCGGTCAAACCTTCAGCGGCAAAAACTTCAGGGTAAAAAGA
TTTGCCAGGGAATCATGTTTCCCTGCAAGGAAAGGGACTACTTTTGACTTTTGA

Peptide Sequence

PEP ID

VIT_06s0004g04860.t01
PEP Infomation

pep chromosome:12X:6:5816980:5819572:-1 gene:VIT_06s0004g04860 transcript:VIT_06s0004g04860.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expansin [Source:UniProtKB/TrEMBL;Acc:F6GV05]
Sequence

MAVGVVVCFASLISLFSLVQAKIPGAYSGGAWQSAHATFYGGSDASGTMGGACGYGNLYS
QGYGVNTAALSTALFNNGLSCGACFELKCANDPTWCHSGSPSILITATNFCPPNYALPSD
NGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKQGGIRFTINGFRYFNLVLI
TNVAGAGDIVRASVKGSKTGWMSLSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNI
APAHWQFGQTFSGKNFRVKRFARESCFPARKGTTFDF

Transcript Sequence

Transcript ID

VIT_06s0004g04860.t01
Transcript Infomation

cdna chromosome:12X:6:5816980:5819572:-1 gene:VIT_06s0004g04860 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expansin [Source:UniProtKB/TrEMBL;Acc:F6GV05]
Sequence

CTCTCTCTCTCTCTCTCTTTCTCGCTCTAAAGAGTGGTGTTTGGTTTGTAGTGAGAGAGA
AAATGGCTGTGGGCGTTGTGGTCTGCTTTGCTTCCCTTATCTCGTTATTCTCACTCGTTC
AAGCTAAAATTCCTGGCGCCTACTCCGGCGGTGCTTGGCAGAGTGCTCACGCCACCTTCT
ACGGTGGCAGTGACGCCTCTGGCACTATGGGTGGAGCTTGTGGATACGGTAACCTTTACA
GCCAAGGGTACGGCGTGAACACAGCTGCACTGAGCACAGCACTCTTCAACAATGGACTCA
GTTGCGGCGCTTGTTTCGAACTCAAGTGCGCCAATGACCCCACGTGGTGCCACTCCGGCA
GCCCCTCCATTCTTATCACCGCTACCAACTTCTGCCCACCAAACTATGCTCTTCCCAGCG
ACAATGGCGGCTGGTGCAACCCTCCCCGCCCCCACTTCGATCTCGCCATGCCCATGTTCC
TCAAGATCGCTGAGTATCGTGCCGGGATCGTCCCCGTGGCTTTCCGCCGGGTGCCGTGCC
GTAAGCAAGGAGGGATTAGGTTCACGATCAACGGCTTCCGGTACTTCAATCTGGTTCTGA
TCACCAACGTGGCAGGCGCAGGGGATATCGTGAGGGCGAGCGTAAAAGGGTCGAAGACAG
GGTGGATGAGCCTGAGCAGGAACTGGGGTCAAAACTGGCAGTCAAACGCAGTGCTGGTGG
GGCAATCGCTGTCGTTCAGAGTCACGGGGAGTGACAGGCGCACATCAACATCCTGGAACA
TCGCACCAGCGCATTGGCAGTTCGGTCAAACCTTCAGCGGCAAAAACTTCAGGGTAAAAA
GATTTGCCAGGGAATCATGTTTCCCTGCAAGGAAAGGGACTACTTTTGACTTTTGA