Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_06s0004g04580.t01
CDS Infomation

cds chromosome:12X:6:5555606:5564132:1 gene:VIT_06s0004g04580 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGAGCTGCTCCAACCCTCACACCCCCCAGGCCCTCCTGGAGATCGCTTTTCTGGGTTT
TCACCGCCGGCGAGTTTCCTACATGGGTTTGATCAGGGTAGTCCAGCGGTAGCTTCTTCG
TTGTCGGGGATTGTCGAAGAAGGTGGTGACAGAGTACACGTGGCCGTCGGGAAATCAGTC
GAGAAAGCTGAAAGTTTGCTTCACTGGACTTTCCGGCGATTTGGGAGCTGTGAAATTTGT
CTTGTTCATGTGCATCAACCTTCTCCGCTGATTCCCACCCTCTTGGGGAAACTACCGGCA
AGTCAAGCAAATGGGGAAGTGGTGTCTGCACATAGAAGAGAGGAGAAGAAACAAACAAAT
AAACTTCTACTTAACTACTCGAACATTTGCTCCAGGATGAAGGTGAAACCAAGCATCATT
ACAATTGAAGCTGATCATGTTCAGAAAGGAATTGTAGATCTGGTGAACAGACATGGTATT
AGGAAGCTGGTTATGGGGGGCACTGTGCCAGAAAATTGCATGAAGGTGAAAATGAGCTCT
AGCAAAGCAAATTATGCTGCAAAAAAGGCTCCTGAATTCTGTGAGATCTGGTTTATCCAC
AAAGGAAAACATGTATGGACAAAAGAAGCGTTCAAAGCCCCAGGCTTTCTGCCACCAATT
AGTCATCCAAAGACAGAAACTGGAGAAGACTTAGGTTTCCAACCAGAATGTCTTCCATCC
GGTTCTTCTCCTGTAAGTGTGCTTAGTGGTGGAGATAGAAATGGAGTTGAGAGCGAATTG
GTTAGAACCAGAGTGACATCATCACCAGCCTTATCTGATTCTACTAGTCGAAATGACCCA
CAGTTTAGTCCAACAAGCTCTAGCACCTTTTCTGGATATGGTTCCTCTGCAGAAAAAAGG
TCTATGGATTCCTACTCAAAGACAGAGGAAGAAAGTTTATATTATCAGCTTGCAGAAGCT
ACAATTGAAGCAGAGGCCTCAAGGAACGAAGCATTTTTAGAGCTATTGAAGCGCCAAAAA
TTGGAATCAGAAGCTATGGAAGCTATTGCCAAGGTCAAAGCTTTTGAATCTGCTCATGCA
CGTGAAGTTGAACTTAGGAAAGATGCTGAAGATGCATTGAGAAGTACGATACAGGAACAA
GACAAGCTCTTGGAAGAAAGAGAAAAACTAACCAGGGAGATACAGAAGACCATGAGAAAT
GTAGCCCTTCTAGACAGTCGTGCACAGGAAGCAAACCGGCGATGTGATGAAGCAACTGAG
GAATTAAAACTCATCCAAGCATCCATTGCAACTCTCCAGTATGAAAAGCAGAAGATCCGA
CGGCAAAAAATGGAAGCCATGCATTGGCTTGATCGGTGGAGAAGTCGTGGTCAAGCTGGA
ACTTCACACTGCAATGGATTCATTGGGGTTTTTGAAGATTTGCCTGAGTTAGCAGAATTT
TCACTGTCGGATCTGGAGACTGCGACATGCAATTTTTCCGAGAGTTTCAAGATTGGGCAA
GGAGGAAATGGTTCTGTTTACAAAGGGGAAATGTTAGATAAAACTGTTGCTATTAAGAAG
CTGCATCCCCATAACATGCAGGGACAATCAGAGTTTCAAAGAGAGGTTCAAGTTCTTGGC
AAAATCCAACATCCTCATCTGGTGACTCTGATTGGTGCAAGCCCAGAAGCATGGTCACTA
GTATATGAGTATTTGCCCAATGGGAGCCTCCAAGATCGCCTTTTTCGGAAGAGCAACAAC
TCTCCCCTAACATGGAAGGTCCGAGCACGGATCATCACTGAAATATCGAGTGCCCTTCTC
TTCTTGCACTCTTGCAAACCTGAAAAGATAGTCCATGGCAATCTGAGACCTGAGAACATC
CTTCTTGGTTCTGATCTTCGCTGCAAGATATGTGATTTTGGAATTTGTAGACTTGTCTCT
GATGAAACCCTTCGTTGTCCAAGTTTCCGCCGCAATGCTGAGCCAAAGGGTGCTTTTCCA
TATGAGGATCCAGAGTTGTATAGGACTGGAGTCCTGACAACCAAGTCTGACATTTACTCC
TTTGGAGTAATCATTCTACAGTTACTCACTGGAAGGCCTCCTGTGGGTTTGGCCAGTGAG
GTGCGCAAGGCAGTTTCATGTGGGAAATTAGCATCAATTTTGGATTCTTCAGCTGGAGTA
TGGCCTACACATGTGGCAAGCAGATTGGCGGACCTGGCACTGAGATGCTGTGAATTGAAC
AGTAGGGACAGACCAGAGCTAAAACCAACTCTGGTTAGGGAACTGGAGCAGTTGCATGTT
TCAGAAGAGCAACCAGTTCCATCTTTCTTTTTGTGCCCTATCCTTCAGGACATAATGCAC
GATCCTCATGTGGCAGCAGATGGCTTCACTTATGAAAAAGAAGCCTTGCTTGGGTGGTTG
GAAAATGGCCGGGAAACCTCTCCAATGACCAATTTGAGATTGAGTCACTTGCATCTTACT
CCCAACCATTCACTGAGATCTACAATTCAAGACTGGCTTTGCAAATCATGA

Peptide Sequence

PEP ID

VIT_06s0004g04580.t01
PEP Infomation

pep chromosome:12X:6:5555606:5564132:1 gene:VIT_06s0004g04580 transcript:VIT_06s0004g04580.t01 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MELLQPSHPPGPPGDRFSGFSPPASFLHGFDQGSPAVASSLSGIVEEGGDRVHVAVGKSV
EKAESLLHWTFRRFGSCEICLVHVHQPSPLIPTLLGKLPASQANGEVVSAHRREEKKQTN
KLLLNYSNICSRMKVKPSIITIEADHVQKGIVDLVNRHGIRKLVMGGTVPENCMKVKMSS
SKANYAAKKAPEFCEIWFIHKGKHVWTKEAFKAPGFLPPISHPKTETGEDLGFQPECLPS
GSSPVSVLSGGDRNGVESELVRTRVTSSPALSDSTSRNDPQFSPTSSSTFSGYGSSAEKR
SMDSYSKTEEESLYYQLAEATIEAEASRNEAFLELLKRQKLESEAMEAIAKVKAFESAHA
REVELRKDAEDALRSTIQEQDKLLEEREKLTREIQKTMRNVALLDSRAQEANRRCDEATE
ELKLIQASIATLQYEKQKIRRQKMEAMHWLDRWRSRGQAGTSHCNGFIGVFEDLPELAEF
SLSDLETATCNFSESFKIGQGGNGSVYKGEMLDKTVAIKKLHPHNMQGQSEFQREVQVLG
KIQHPHLVTLIGASPEAWSLVYEYLPNGSLQDRLFRKSNNSPLTWKVRARIITEISSALL
FLHSCKPEKIVHGNLRPENILLGSDLRCKICDFGICRLVSDETLRCPSFRRNAEPKGAFP
YEDPELYRTGVLTTKSDIYSFGVIILQLLTGRPPVGLASEVRKAVSCGKLASILDSSAGV
WPTHVASRLADLALRCCELNSRDRPELKPTLVRELEQLHVSEEQPVPSFFLCPILQDIMH
DPHVAADGFTYEKEALLGWLENGRETSPMTNLRLSHLHLTPNHSLRSTIQDWLCKS

Transcript Sequence

Transcript ID

VIT_06s0004g04580.t01
Transcript Infomation

cdna chromosome:12X:6:5555606:5564132:1 gene:VIT_06s0004g04580 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AAGAGAAATTTGCTAATAAAATCATTTGAAGAATCTTACTTTGATTTTACTTGTACTATA
ATTCCCCAACCCTCCAAACTCTCTCAGAAGCCAAGCCATCGCCGGACTCTGCTGGAGCTC
AGTTTTCCGACCAAAATGGAGCTGCTCCAACCCTCACACCCCCCAGGCCCTCCTGGAGAT
CGCTTTTCTGGGTTTTCACCGCCGGCGAGTTTCCTACATGGGTTTGATCAGGGTAGTCCA
GCGGTAGCTTCTTCGTTGTCGGGGATTGTCGAAGAAGGTGGTGACAGAGTACACGTGGCC
GTCGGGAAATCAGTCGAGAAAGCTGAAAGTTTGCTTCACTGGACTTTCCGGCGATTTGGG
AGCTGTGAAATTTGTCTTGTTCATGTGCATCAACCTTCTCCGCTGATTCCCACCCTCTTG
GGGAAACTACCGGCAAGTCAAGCAAATGGGGAAGTGGTGTCTGCACATAGAAGAGAGGAG
AAGAAACAAACAAATAAACTTCTACTTAACTACTCGAACATTTGCTCCAGGATGAAGGTG
AAACCAAGCATCATTACAATTGAAGCTGATCATGTTCAGAAAGGAATTGTAGATCTGGTG
AACAGACATGGTATTAGGAAGCTGGTTATGGGGGGCACTGTGCCAGAAAATTGCATGAAG
GTGAAAATGAGCTCTAGCAAAGCAAATTATGCTGCAAAAAAGGCTCCTGAATTCTGTGAG
ATCTGGTTTATCCACAAAGGAAAACATGTATGGACAAAAGAAGCGTTCAAAGCCCCAGGC
TTTCTGCCACCAATTAGTCATCCAAAGACAGAAACTGGAGAAGACTTAGGTTTCCAACCA
GAATGTCTTCCATCCGGTTCTTCTCCTGTAAGTGTGCTTAGTGGTGGAGATAGAAATGGA
GTTGAGAGCGAATTGGTTAGAACCAGAGTGACATCATCACCAGCCTTATCTGATTCTACT
AGTCGAAATGACCCACAGTTTAGTCCAACAAGCTCTAGCACCTTTTCTGGATATGGTTCC
TCTGCAGAAAAAAGGTCTATGGATTCCTACTCAAAGACAGAGGAAGAAAGTTTATATTAT
CAGCTTGCAGAAGCTACAATTGAAGCAGAGGCCTCAAGGAACGAAGCATTTTTAGAGCTA
TTGAAGCGCCAAAAATTGGAATCAGAAGCTATGGAAGCTATTGCCAAGGTCAAAGCTTTT
GAATCTGCTCATGCACGTGAAGTTGAACTTAGGAAAGATGCTGAAGATGCATTGAGAAGT
ACGATACAGGAACAAGACAAGCTCTTGGAAGAAAGAGAAAAACTAACCAGGGAGATACAG
AAGACCATGAGAAATGTAGCCCTTCTAGACAGTCGTGCACAGGAAGCAAACCGGCGATGT
GATGAAGCAACTGAGGAATTAAAACTCATCCAAGCATCCATTGCAACTCTCCAGTATGAA
AAGCAGAAGATCCGACGGCAAAAAATGGAAGCCATGCATTGGCTTGATCGGTGGAGAAGT
CGTGGTCAAGCTGGAACTTCACACTGCAATGGATTCATTGGGGTTTTTGAAGATTTGCCT
GAGTTAGCAGAATTTTCACTGTCGGATCTGGAGACTGCGACATGCAATTTTTCCGAGAGT
TTCAAGATTGGGCAAGGAGGAAATGGTTCTGTTTACAAAGGGGAAATGTTAGATAAAACT
GTTGCTATTAAGAAGCTGCATCCCCATAACATGCAGGGACAATCAGAGTTTCAAAGAGAG
GTTCAAGTTCTTGGCAAAATCCAACATCCTCATCTGGTGACTCTGATTGGTGCAAGCCCA
GAAGCATGGTCACTAGTATATGAGTATTTGCCCAATGGGAGCCTCCAAGATCGCCTTTTT
CGGAAGAGCAACAACTCTCCCCTAACATGGAAGGTCCGAGCACGGATCATCACTGAAATA
TCGAGTGCCCTTCTCTTCTTGCACTCTTGCAAACCTGAAAAGATAGTCCATGGCAATCTG
AGACCTGAGAACATCCTTCTTGGTTCTGATCTTCGCTGCAAGATATGTGATTTTGGAATT
TGTAGACTTGTCTCTGATGAAACCCTTCGTTGTCCAAGTTTCCGCCGCAATGCTGAGCCA
AAGGGTGCTTTTCCATATGAGGATCCAGAGTTGTATAGGACTGGAGTCCTGACAACCAAG
TCTGACATTTACTCCTTTGGAGTAATCATTCTACAGTTACTCACTGGAAGGCCTCCTGTG
GGTTTGGCCAGTGAGGTGCGCAAGGCAGTTTCATGTGGGAAATTAGCATCAATTTTGGAT
TCTTCAGCTGGAGTATGGCCTACACATGTGGCAAGCAGATTGGCGGACCTGGCACTGAGA
TGCTGTGAATTGAACAGTAGGGACAGACCAGAGCTAAAACCAACTCTGGTTAGGGAACTG
GAGCAGTTGCATGTTTCAGAAGAGCAACCAGTTCCATCTTTCTTTTTGTGCCCTATCCTT
CAGGACATAATGCACGATCCTCATGTGGCAGCAGATGGCTTCACTTATGAAAAAGAAGCC
TTGCTTGGGTGGTTGGAAAATGGCCGGGAAACCTCTCCAATGACCAATTTGAGATTGAGT
CACTTGCATCTTACTCCCAACCATTCACTGAGATCTACAATTCAAGACTGGCTTTGCAAA
TCATGAAGTCTCCTGCATGTATGCGTGTACATAGTCTCTGTTCTTTCTTTGTGTACAGAG
GTGTATTCTTAGATAGTCACCATTGTAGATCAGGCATTGATGATTCACTAGCGGGTTTGG
GTTATTTTCTTGTTAAAATGAGGTCATGAACTCCAACCCAAAAAGGGAAAAATAAAACTT
TATAGACCATATGTGAAATGGAAATCTTAATATTACCTGTATGATGATACTCAGATTCTT
TGCTGTT