Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_06s0004g01510.t01
CDS Infomation

cds chromosome:12X:6:1875241:1881867:-1 gene:VIT_06s0004g01510 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:D7SLA9]
Sequence

ATGTTCAAGACTCAGGTCCACCAGTCACACACTGCCCCGACCTTCTTCCTGTTGAACAAA
CCGTGCATTCCCGGCCCCGGAACTGCTTCATTTTCCGTCAGGCCGAGGCCGGAATTCCGA
AAAAAGTACAGGAATGTTAGGGTTGGCTACGTCCCTGCCAACATTAAAGCAGTTGCTAGT
GATACTGATACCCGGAAGTCCGTATCTGTTAAGGCCACTGTTACTGTGAAATTAACAGTT
GGAGGGTTCTTGTCTAGCCTGATAGGGTTGAGCCATGGGCTCGATGATGTATCTGACTGG
CTTGGTAAAACACTCCTCTTGGAGGTCGTCAGTTCAGAGGTTGACCCCAAGACGGGCTTA
GAGAAGAAACCCATCGGCGCATATGCTCATCGGGCTGCCGAAAAGGACGGGGAAGTAACA
TATGAATCAGACTTTGTGATTCCTGATGATTTTGGGGAGATTGGTGCGGTTCTTGTTCAG
AATGAGCACCACAAGGAGATGTACCTGAGGTACATAGTCCTTGATGGCTTCCCAAATGGC
CCCATTGAATTCAACTGTAGTTCATGGGTTGCTTCCAAGTTTGATGACCCTCAGAAGAGG
GTCTTCTTCACCAACAAGTCATACTTACCATTGGAAACACCAAGTGGACTCAAAGAAATA
AGAGAAAAAGAGCTTGTAACCTTGCGAGGTAATGGTCAAGGAGAGCGCAAGTCATATGAT
AGAATCTATGACTATGATGTATACGATGATCTGGGTGATCCAGACAGCAGTCCTGAACTG
ACTCGACCGGTACTTGGTGGTAGCAAGCAGTATCCCTACCCAAGACGATGTAGAACGGGG
CGTCCAATGTCTAAGATTGACCCGAAAGCAGAGACAAGGAGTTCAACCGTCTATGTGCCA
AGGGACGAAGCATTTTCGGACGTGAAGGAGCTAACATTCTCTACAAATACGTTATACTCA
GCGTTGCACGCTGTGGTGCCGGCAATAGAGTCAGTGATTACAGACACTAGTCTTGGATTT
CCACTCTTCACCAAAATAGACGAGTTATACAATGAAGGAATCAATGTTCCTAATCTTAAA
AAGCATAAGGTTTTGCAAGATATACTGCCCAGACTAGTGAGGGCCATCACTAATTCTACA
GATAGTCTCCTGCAATTTGAAACCCCTCAACTGTTGCTCAGGGACAAATTTTCTTGGTTT
AGGGATGAGGAGTTCTCACGCCAGACTCTTGCCGGTCTCAATCCATATAGTATACAATTG
GTTAAGGAATGGCCATTGAAGAGCACACTCGATCCTAAGATCTATGGTCCCCCTGAATCT
GCAATCACCACGGAGATAGTCGAGCGAGAGATCAAAGGATTCATGACCGTTGATGAGGCA
CTAAAACAAAAGAAGCTGTTCATCATAGATTATCATGACATCTTATTGCCATACGTGAGC
GAAGTAAGGCAAATCAAAGGGACAACGCTGTATGGATCAAGGGCACTTTTCTTCCTAGGC
CCTGATAACACATTGAAGCCGCTGGCCATCGAACTCGTCCGACCACCCATGGATGGGAAG
CCGCAGTGGAAGCAAGTGTTTACGCCTAGCTGGGAAGCCACAGGTTCCTGGCTCTGGAAA
CTTGCTAAAACTCATTTCCTTGCTCATGACGCTGGTTATCACCAGCTTGTTAGTCACTGG
TTGAGAACTCACTGTGTAACAGAACCTTATATAATTGCAACGAATCGACAACTTAGTGCA
ATGCACCCAATCTATAGACTGTTACACCCTCATTTCCGGTACACAATGGAGATCAATGCT
CTTGCTCGAGAAGCTCTCATCAATGCTGATGGGATCATTGAGTCCGCATTCACACCCGGA
AAGTATTCTACTGAGATCAGCTCTGCTGCCTATGGCCTGCAGTGGCGCTTTGATACACAA
GGACTGCCAGCAGACCTAATAAGCAGGGGAATTGCTGTTGAGGACCCAAGTTCTCCACAT
GGCCTAAAGCTAGCAATCCCAGATTATCCTTTTGCCAATGATGGTCTCCTCCTGTGGGAT
GCCATAAAAGAATGGGTTACCGATTATGTCAATTTCTTCTACAAGGATGCGAGCATGGTG
AAGTCTGATGCAGAGCTTCAAGCATGGTGGACTGAAATCCGAACAAGAGGCCATGAGGAC
AAGAAAGATGAAACATGGTGGCCAGACCTCAAAACACCCCAAGACCTAATTGGGATTGTC
ACAACTATGGTATGGGTAACGTCTGGGCACCATGCTGCCGTCAACTTTGGACAATATGCT
TATGCTGGTTACTTCCCCAATAGGCCTACTATTGCCAGGACCAACCTCCCTTCTGAGGAC
CCAACTGAAGAAGGATGGCGCCGGTTTTTGCACAAACCTGAGAATGAACTCTTGGCATGC
CTGCCTACACAGCTTCAAGCAGCAAAAGTTTTGACTGTTTTAGATGTGTTATCAAGTCAT
TCTCCAGATGAGGAATACCTAGGGGAGCATTTGGAGCCAGCATGGGGTGCAGATCCCTTA
ATAAAGGCAGCATTTGAACGGTTTTCTGGAAGGTTGAAAGAAATTGAAGGAATCATTGAT
GCTAGGAATGAAGACAAGAATTTGAAGAACAGACACGGAGCTGGAGTGGTTCCATATGAG
CTTCTGAAGCCATTTTCTGGAGCTGGTGTGACAGGAAAGGGAGTTCCATACAGTATCTCC
ATTTGA

Peptide Sequence

PEP ID

VIT_06s0004g01510.t01
PEP Infomation

pep chromosome:12X:6:1875241:1881867:-1 gene:VIT_06s0004g01510 transcript:VIT_06s0004g01510.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:D7SLA9]
Sequence

MFKTQVHQSHTAPTFFLLNKPCIPGPGTASFSVRPRPEFRKKYRNVRVGYVPANIKAVAS
DTDTRKSVSVKATVTVKLTVGGFLSSLIGLSHGLDDVSDWLGKTLLLEVVSSEVDPKTGL
EKKPIGAYAHRAAEKDGEVTYESDFVIPDDFGEIGAVLVQNEHHKEMYLRYIVLDGFPNG
PIEFNCSSWVASKFDDPQKRVFFTNKSYLPLETPSGLKEIREKELVTLRGNGQGERKSYD
RIYDYDVYDDLGDPDSSPELTRPVLGGSKQYPYPRRCRTGRPMSKIDPKAETRSSTVYVP
RDEAFSDVKELTFSTNTLYSALHAVVPAIESVITDTSLGFPLFTKIDELYNEGINVPNLK
KHKVLQDILPRLVRAITNSTDSLLQFETPQLLLRDKFSWFRDEEFSRQTLAGLNPYSIQL
VKEWPLKSTLDPKIYGPPESAITTEIVEREIKGFMTVDEALKQKKLFIIDYHDILLPYVS
EVRQIKGTTLYGSRALFFLGPDNTLKPLAIELVRPPMDGKPQWKQVFTPSWEATGSWLWK
LAKTHFLAHDAGYHQLVSHWLRTHCVTEPYIIATNRQLSAMHPIYRLLHPHFRYTMEINA
LAREALINADGIIESAFTPGKYSTEISSAAYGLQWRFDTQGLPADLISRGIAVEDPSSPH
GLKLAIPDYPFANDGLLLWDAIKEWVTDYVNFFYKDASMVKSDAELQAWWTEIRTRGHED
KKDETWWPDLKTPQDLIGIVTTMVWVTSGHHAAVNFGQYAYAGYFPNRPTIARTNLPSED
PTEEGWRRFLHKPENELLACLPTQLQAAKVLTVLDVLSSHSPDEEYLGEHLEPAWGADPL
IKAAFERFSGRLKEIEGIIDARNEDKNLKNRHGAGVVPYELLKPFSGAGVTGKGVPYSIS
I

Transcript Sequence

Transcript ID

VIT_06s0004g01510.t01
Transcript Infomation

cdna chromosome:12X:6:1875241:1881867:-1 gene:VIT_06s0004g01510 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:D7SLA9]
Sequence

CTAAAGCGAATTAAGCCTTTCATCTACCATTCTCCCTGCTGGAGATATGTTCAAGACTCA
GGTCCACCAGTCACACACTGCCCCGACCTTCTTCCTGTTGAACAAACCGTGCATTCCCGG
CCCCGGAACTGCTTCATTTTCCGTCAGGCCGAGGCCGGAATTCCGAAAAAAGTACAGGAA
TGTTAGGGTTGGCTACGTCCCTGCCAACATTAAAGCAGTTGCTAGTGATACTGATACCCG
GAAGTCCGTATCTGTTAAGGCCACTGTTACTGTGAAATTAACAGTTGGAGGGTTCTTGTC
TAGCCTGATAGGGTTGAGCCATGGGCTCGATGATGTATCTGACTGGCTTGGTAAAACACT
CCTCTTGGAGGTCGTCAGTTCAGAGGTTGACCCCAAGACGGGCTTAGAGAAGAAACCCAT
CGGCGCATATGCTCATCGGGCTGCCGAAAAGGACGGGGAAGTAACATATGAATCAGACTT
TGTGATTCCTGATGATTTTGGGGAGATTGGTGCGGTTCTTGTTCAGAATGAGCACCACAA
GGAGATGTACCTGAGGTACATAGTCCTTGATGGCTTCCCAAATGGCCCCATTGAATTCAA
CTGTAGTTCATGGGTTGCTTCCAAGTTTGATGACCCTCAGAAGAGGGTCTTCTTCACCAA
CAAGTCATACTTACCATTGGAAACACCAAGTGGACTCAAAGAAATAAGAGAAAAAGAGCT
TGTAACCTTGCGAGGTAATGGTCAAGGAGAGCGCAAGTCATATGATAGAATCTATGACTA
TGATGTATACGATGATCTGGGTGATCCAGACAGCAGTCCTGAACTGACTCGACCGGTACT
TGGTGGTAGCAAGCAGTATCCCTACCCAAGACGATGTAGAACGGGGCGTCCAATGTCTAA
GATTGACCCGAAAGCAGAGACAAGGAGTTCAACCGTCTATGTGCCAAGGGACGAAGCATT
TTCGGACGTGAAGGAGCTAACATTCTCTACAAATACGTTATACTCAGCGTTGCACGCTGT
GGTGCCGGCAATAGAGTCAGTGATTACAGACACTAGTCTTGGATTTCCACTCTTCACCAA
AATAGACGAGTTATACAATGAAGGAATCAATGTTCCTAATCTTAAAAAGCATAAGGTTTT
GCAAGATATACTGCCCAGACTAGTGAGGGCCATCACTAATTCTACAGATAGTCTCCTGCA
ATTTGAAACCCCTCAACTGTTGCTCAGGGACAAATTTTCTTGGTTTAGGGATGAGGAGTT
CTCACGCCAGACTCTTGCCGGTCTCAATCCATATAGTATACAATTGGTTAAGGAATGGCC
ATTGAAGAGCACACTCGATCCTAAGATCTATGGTCCCCCTGAATCTGCAATCACCACGGA
GATAGTCGAGCGAGAGATCAAAGGATTCATGACCGTTGATGAGGCACTAAAACAAAAGAA
GCTGTTCATCATAGATTATCATGACATCTTATTGCCATACGTGAGCGAAGTAAGGCAAAT
CAAAGGGACAACGCTGTATGGATCAAGGGCACTTTTCTTCCTAGGCCCTGATAACACATT
GAAGCCGCTGGCCATCGAACTCGTCCGACCACCCATGGATGGGAAGCCGCAGTGGAAGCA
AGTGTTTACGCCTAGCTGGGAAGCCACAGGTTCCTGGCTCTGGAAACTTGCTAAAACTCA
TTTCCTTGCTCATGACGCTGGTTATCACCAGCTTGTTAGTCACTGGTTGAGAACTCACTG
TGTAACAGAACCTTATATAATTGCAACGAATCGACAACTTAGTGCAATGCACCCAATCTA
TAGACTGTTACACCCTCATTTCCGGTACACAATGGAGATCAATGCTCTTGCTCGAGAAGC
TCTCATCAATGCTGATGGGATCATTGAGTCCGCATTCACACCCGGAAAGTATTCTACTGA
GATCAGCTCTGCTGCCTATGGCCTGCAGTGGCGCTTTGATACACAAGGACTGCCAGCAGA
CCTAATAAGCAGGGGAATTGCTGTTGAGGACCCAAGTTCTCCACATGGCCTAAAGCTAGC
AATCCCAGATTATCCTTTTGCCAATGATGGTCTCCTCCTGTGGGATGCCATAAAAGAATG
GGTTACCGATTATGTCAATTTCTTCTACAAGGATGCGAGCATGGTGAAGTCTGATGCAGA
GCTTCAAGCATGGTGGACTGAAATCCGAACAAGAGGCCATGAGGACAAGAAAGATGAAAC
ATGGTGGCCAGACCTCAAAACACCCCAAGACCTAATTGGGATTGTCACAACTATGGTATG
GGTAACGTCTGGGCACCATGCTGCCGTCAACTTTGGACAATATGCTTATGCTGGTTACTT
CCCCAATAGGCCTACTATTGCCAGGACCAACCTCCCTTCTGAGGACCCAACTGAAGAAGG
ATGGCGCCGGTTTTTGCACAAACCTGAGAATGAACTCTTGGCATGCCTGCCTACACAGCT
TCAAGCAGCAAAAGTTTTGACTGTTTTAGATGTGTTATCAAGTCATTCTCCAGATGAGGA
ATACCTAGGGGAGCATTTGGAGCCAGCATGGGGTGCAGATCCCTTAATAAAGGCAGCATT
TGAACGGTTTTCTGGAAGGTTGAAAGAAATTGAAGGAATCATTGATGCTAGGAATGAAGA
CAAGAATTTGAAGAACAGACACGGAGCTGGAGTGGTTCCATATGAGCTTCTGAAGCCATT
TTCTGGAGCTGGTGTGACAGGAAAGGGAGTTCCATACAGTATCTCCATTTGAAGTCACAA
TGAAATGCTTTGGGAGTGAAGTTTTGAACTCATTTTATGGTTGCAAAACAATGTAAAATG
TGAAATTCGAATCAGGGTAATAAAGATATGCAGTCTTGAATGCAGG