Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_06s0004g01130.t01
CDS Infomation

cds chromosome:12X:6:1222180:1223740:-1 gene:VIT_06s0004g01130 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7SLE4]
Sequence

ATGGCTCCAGGAGGTGGCATCTGCAAGGAAGTTTGCGAGTCCCGCTCTGCATTTGCAGAC
TATGATGTAACAACAGCAAATTTGGAACTAAGAAGTTCTCCTTTCAGAAAAGCAACTACT
GGTGTTGGTGGAAAGCATGGAATGCCATCAACTAGTGGTGTGCATGAGCTGTTGGAATGC
CCTGTTTGCATGGATCTAATGCACCCTCCTATTCACCAGTGTCCAAATGGCCACACTTTA
TGTTCCAACTGCAAGGCCAGAGTGCACAACTGTTGCCCAACTTGTCGCTTTGAGCTAGGG
AATATAAGGTGTTTGGCTTTGGAAAAAATTGCGGAATCACTGGAACTTCCATGCAGATAC
CAAATTTTCGGTTGTCATGATATTTTCCCATATTACAGCAAGCTCAAGCATGAACAAAAC
TGCCAGTTTCGCCCATACAGCTGCCCGTATGCTGGGGCTGAGTGTTCTGTCACTGGCGAT
ATTCCGCTCCTTGTCATGCACCTCAAGGATGATCACAAGGTTGATATGCATGATGGGTGT
ACTTTCAACCACAGATATGTCAAATCCAATCCCCAAGAAGTCGAAAATGCCACATGGATG
CTGACTGTTTTCAACTGTTTTGGCAGGCAGTTCTGCTTACACTTTGAGGCATTCCATCTG
GGAATGGCACCTGTTTACATGGCCTTTTTGCGGTTCATGGGCGACGAAAATGAAGCAAGG
AAGTTCAGCTATAGTCTTGAGGTAGGCGGATATGGCAGAAAGCTAATATGGCAAGGAGTT
CCCAGGAGCATTCGCGATAGCCATAAAATGGTTCGGGACAGCCAAGATGGACTCGTTATT
CAGAGAAAGTTAGCACTTTTCTTCTCTGGTGGCGAGAGGCAGCAACTGAAGCTGAAGGTG
GCCGGCCGTATTTGGAAAGAGCAGTGA

Peptide Sequence

PEP ID

VIT_06s0004g01130.t01
PEP Infomation

pep chromosome:12X:6:1222180:1223740:-1 gene:VIT_06s0004g01130 transcript:VIT_06s0004g01130.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7SLE4]
Sequence

MAPGGGICKEVCESRSAFADYDVTTANLELRSSPFRKATTGVGGKHGMPSTSGVHELLEC
PVCMDLMHPPIHQCPNGHTLCSNCKARVHNCCPTCRFELGNIRCLALEKIAESLELPCRY
QIFGCHDIFPYYSKLKHEQNCQFRPYSCPYAGAECSVTGDIPLLVMHLKDDHKVDMHDGC
TFNHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFHLGMAPVYMAFLRFMGDENEAR
KFSYSLEVGGYGRKLIWQGVPRSIRDSHKMVRDSQDGLVIQRKLALFFSGGERQQLKLKV
AGRIWKEQ

Transcript Sequence

Transcript ID

VIT_06s0004g01130.t01
Transcript Infomation

cdna chromosome:12X:6:1222180:1223740:-1 gene:VIT_06s0004g01130 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7SLE4]
Sequence

TGAACAGAGATGGCTCCAGGAGGTGGCATCTGCAAGGAAGTTTGCGAGTCCCGCTCTGCA
TTTGCAGACTATGATGTAACAACAGCAAATTTGGAACTAAGAAGTTCTCCTTTCAGAAAA
GCAACTACTGGTGTTGGTGGAAAGCATGGAATGCCATCAACTAGTGGTGTGCATGAGCTG
TTGGAATGCCCTGTTTGCATGGATCTAATGCACCCTCCTATTCACCAGTGTCCAAATGGC
CACACTTTATGTTCCAACTGCAAGGCCAGAGTGCACAACTGTTGCCCAACTTGTCGCTTT
GAGCTAGGGAATATAAGGTGTTTGGCTTTGGAAAAAATTGCGGAATCACTGGAACTTCCA
TGCAGATACCAAATTTTCGGTTGTCATGATATTTTCCCATATTACAGCAAGCTCAAGCAT
GAACAAAACTGCCAGTTTCGCCCATACAGCTGCCCGTATGCTGGGGCTGAGTGTTCTGTC
ACTGGCGATATTCCGCTCCTTGTCATGCACCTCAAGGATGATCACAAGGTTGATATGCAT
GATGGGTGTACTTTCAACCACAGATATGTCAAATCCAATCCCCAAGAAGTCGAAAATGCC
ACATGGATGCTGACTGTTTTCAACTGTTTTGGCAGGCAGTTCTGCTTACACTTTGAGGCA
TTCCATCTGGGAATGGCACCTGTTTACATGGCCTTTTTGCGGTTCATGGGCGACGAAAAT
GAAGCAAGGAAGTTCAGCTATAGTCTTGAGGTAGGCGGATATGGCAGAAAGCTAATATGG
CAAGGAGTTCCCAGGAGCATTCGCGATAGCCATAAAATGGTTCGGGACAGCCAAGATGGA
CTCGTTATTCAGAGAAAGTTAGCACTTTTCTTCTCTGGTGGCGAGAGGCAGCAACTGAAG
CTGAAGGTGGCCGGCCGTATTTGGAAAGAGCAGTGAGGGTTAAGTGCAGGG