Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_05s0077g00890.t01
CDS Infomation

cds chromosome:12X:5:686478:687981:1 gene:VIT_05s0077g00890 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase [Source:UniProtKB/TrEMBL;Acc:D7SYK4]
Sequence

ATGTCTTCACCATTCCTTCAAGCCATTCACATTGCCTTTCTGGTCATTGTCTCCGTCTCC
ATCCCTGCATCCCATGCAGCACATAACAAATCCCCCAATCTCAATACAACAGTGTTAGAT
TCTCCTCTCTTGACGAAAAAGATTGGTGCCAACCACACGATCAAGGTCGATATCAATGGC
AGAGGAGACTTCACTTCTGTTCAAGCTGCCATTGACTCTGTTCCTGAAGGGAATGGCAAG
TGGACTATCATCCATATCAGAAAAGGGGTGTACAAAGAGAAGGTTCACATACCAGAGAAC
AAGCCTTATATCTTCCTGAGAGGAAATGGGAGAGGCAGGACTTCCATCGTTTGGTCCCAA
AGCTCCAAGGACAACATAGAGTCTGCAACTTTCAAAGTTAAAGCCCCCCATGTTGTTATC
TTTGGTATCAGCTTCAAGAATGATGCTCCGACCGGGGTCGCCCAGACCTCACAGAACCAG
TCAGTGGCAGCATATGTGGGGGCGGAGATGGTAGCATTCTACCACTGCTCCTTCTACAGT
ACCCACAACACTCTCTTTGATTACAAAGGCAGGCACTTCTACCACAACTGCTACATCCAG
GGCTCAGTTGATTTCATCTTTGGCCGCGGAAGATCCATCTTCCATAACTGTGAGATATTC
GTGATTGCAGACCAAAGGGTGAAGATCTCAGGATCCATCACAGCTCAGAACAGGCAAAGT
GGAGAAGATAACAGTGGGTTTGTGTTTGTGAAAGGGAAAGTGTATGGCATTGGAGGAGTA
TACTTGGGTAGAGCCAAAGGCTCCCATTCTAGAGCGGTTTTTGCGAAGGTTTATATGTCT
AGGACAATAGTCCCGCAGGGCTGGACCAAATGGAGCTATACTGGCAGCACCGAGAACCTA
TTCCAAGCGGAGTACAAATGCTATGGACCAGGAGCAGAAACAGAGAACCGGGCTTCATGG
TCTTTACAGCTCACTGATGAAGAAGCTGCTCCTTACCTCTCCGTGGACTTCGTGGATGGC
CAGAAATGGCTACCGGCATGGCTATGA

Peptide Sequence

PEP ID

VIT_05s0077g00890.t01
PEP Infomation

pep chromosome:12X:5:686478:687981:1 gene:VIT_05s0077g00890 transcript:VIT_05s0077g00890.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase [Source:UniProtKB/TrEMBL;Acc:D7SYK4]
Sequence

MSSPFLQAIHIAFLVIVSVSIPASHAAHNKSPNLNTTVLDSPLLTKKIGANHTIKVDING
RGDFTSVQAAIDSVPEGNGKWTIIHIRKGVYKEKVHIPENKPYIFLRGNGRGRTSIVWSQ
SSKDNIESATFKVKAPHVVIFGISFKNDAPTGVAQTSQNQSVAAYVGAEMVAFYHCSFYS
THNTLFDYKGRHFYHNCYIQGSVDFIFGRGRSIFHNCEIFVIADQRVKISGSITAQNRQS
GEDNSGFVFVKGKVYGIGGVYLGRAKGSHSRAVFAKVYMSRTIVPQGWTKWSYTGSTENL
FQAEYKCYGPGAETENRASWSLQLTDEEAAPYLSVDFVDGQKWLPAWL

Transcript Sequence

Transcript ID

VIT_05s0077g00890.t01
Transcript Infomation

cdna chromosome:12X:5:686478:687981:1 gene:VIT_05s0077g00890 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase [Source:UniProtKB/TrEMBL;Acc:D7SYK4]
Sequence

CTCCTACAAGCTCCCTTTCCATATCCAAACAATTCAGCTTCTGCTCCTCCTGGAAACCAT
GTCTTCACCATTCCTTCAAGCCATTCACATTGCCTTTCTGGTCATTGTCTCCGTCTCCAT
CCCTGCATCCCATGCAGCACATAACAAATCCCCCAATCTCAATACAACAGTGTTAGATTC
TCCTCTCTTGACGAAAAAGATTGGTGCCAACCACACGATCAAGGTCGATATCAATGGCAG
AGGAGACTTCACTTCTGTTCAAGCTGCCATTGACTCTGTTCCTGAAGGGAATGGCAAGTG
GACTATCATCCATATCAGAAAAGGGGTGTACAAAGAGAAGGTTCACATACCAGAGAACAA
GCCTTATATCTTCCTGAGAGGAAATGGGAGAGGCAGGACTTCCATCGTTTGGTCCCAAAG
CTCCAAGGACAACATAGAGTCTGCAACTTTCAAAGTTAAAGCCCCCCATGTTGTTATCTT
TGGTATCAGCTTCAAGAATGATGCTCCGACCGGGGTCGCCCAGACCTCACAGAACCAGTC
AGTGGCAGCATATGTGGGGGCGGAGATGGTAGCATTCTACCACTGCTCCTTCTACAGTAC
CCACAACACTCTCTTTGATTACAAAGGCAGGCACTTCTACCACAACTGCTACATCCAGGG
CTCAGTTGATTTCATCTTTGGCCGCGGAAGATCCATCTTCCATAACTGTGAGATATTCGT
GATTGCAGACCAAAGGGTGAAGATCTCAGGATCCATCACAGCTCAGAACAGGCAAAGTGG
AGAAGATAACAGTGGGTTTGTGTTTGTGAAAGGGAAAGTGTATGGCATTGGAGGAGTATA
CTTGGGTAGAGCCAAAGGCTCCCATTCTAGAGCGGTTTTTGCGAAGGTTTATATGTCTAG
GACAATAGTCCCGCAGGGCTGGACCAAATGGAGCTATACTGGCAGCACCGAGAACCTATT
CCAAGCGGAGTACAAATGCTATGGACCAGGAGCAGAAACAGAGAACCGGGCTTCATGGTC
TTTACAGCTCACTGATGAAGAAGCTGCTCCTTACCTCTCCGTGGACTTCGTGGATGGCCA
GAAATGGCTACCGGCATGGCTATGA