Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_05s0062g01080.t01
CDS Infomation

cds chromosome:12X:5:19721309:19736782:-1 gene:VIT_05s0062g01080 gene_biotype:protein_coding transcript_biotype:protein_coding description:Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/TrEMBL;Acc:D7U9M6]
Sequence

ATGGCGAACACAATGGCTCGGTCGTTTCTTCAAGTGGCGGCTACGGAGGAGGTTGCTTCG
CCGCTCCGAGTAGTTCAGATCGAGGGACTGGTTATATTAAAGATAATCAAACACTGCAAG
GAGTTTTCACCTGCTTTGGTCACAGGCCAACTCCTTGGGTTAGATGTTGGCAGTGTTCTT
GAAGTCACTAATTGTTTCCCATTCCCGATCCGAGAAGAGGATGAGGAGATTGAAGCAGAT
GGCGCTAATTATCAGCTCGAAATGATGAGATGCTTGAGAGAGGTTAATGTTGATAATAAC
ACTGTTGGATGGTACCAATCAACTTTGTTGGGTTCTTTTCAGACAGTAGAACTGATTGAG
ACGTTTATGAATTACCAGGAGAACATAAGACGATGTGTGTGCATTATCTATGATCCCTCA
AGGTCCAATCAAGGTGTCTTAGCTCTCAAGGCCTTGAAGCTTTCTGATTCTTTTATGGAA
CTTTATCGCAACAACAATTTTACTGGAGAGAAGTTGAGGGAGAAAAATTTGTCATGGGTG
GATATCTTTGAGGAAATACCTATCAAAGTGTCAAACTCTGCCCTTATCAGCGCCTTTATG
ACAGAGCTGGAAGCAGATACACCGGTGACCCAGTGTGATTATGATCGGCTACAATTGTCA
ACCAATCCATATATGGAGAGGAATCTAGAATTTTTGATTGAATGCATGGATGACTTGTCA
ATGGAACAACAAAAGTTCCAATTCTACTATCGCAACCTGTCACGTCAACAAGGACAGCAG
CAGGCATGGCTTCAGAAGAGAAGGGCAGAGAACATGGCTCGTAAAACTGCAGGAGAAGAC
CCCTTGCCCGAGGAGGATCCTGCAAACCCCATCTTTAAGCCAATCCCTGAGCCATCACGG
TTGGATAGCTTTCTTATAACAAATCAAATTTCCAACTACTGCAACCAGATTAATGGGGTT
GCTGGACAGAGCTTCAGCAGATTGTACTTGATGAAGGCATTACATGAGAATTGA

Peptide Sequence

PEP ID

VIT_05s0062g01080.t01
PEP Infomation

pep chromosome:12X:5:19721309:19736782:-1 gene:VIT_05s0062g01080 transcript:VIT_05s0062g01080.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/TrEMBL;Acc:D7U9M6]
Sequence

MANTMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL
EVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIE
TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRNNNFTGEKLREKNLSWV
DIFEEIPIKVSNSALISAFMTELEADTPVTQCDYDRLQLSTNPYMERNLEFLIECMDDLS
MEQQKFQFYYRNLSRQQGQQQAWLQKRRAENMARKTAGEDPLPEEDPANPIFKPIPEPSR
LDSFLITNQISNYCNQINGVAGQSFSRLYLMKALHEN

Transcript Sequence

Transcript ID

VIT_05s0062g01080.t01
Transcript Infomation

cdna chromosome:12X:5:19721309:19736782:-1 gene:VIT_05s0062g01080 gene_biotype:protein_coding transcript_biotype:protein_coding description:Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/TrEMBL;Acc:D7U9M6]
Sequence

AAAGAAGCTAGGGTTTTGTTTCGAAAGCATTATTCTCTTCCTCCCGTCTCCCAAAATCTC
TAGAATCCATGGCGAACACAATGGCTCGGTCGTTTCTTCAAGTGGCGGCTACGGAGGAGG
TTGCTTCGCCGCTCCGAGTAGTTCAGATCGAGGGACTGGTTATATTAAAGATAATCAAAC
ACTGCAAGGAGTTTTCACCTGCTTTGGTCACAGGCCAACTCCTTGGGTTAGATGTTGGCA
GTGTTCTTGAAGTCACTAATTGTTTCCCATTCCCGATCCGAGAAGAGGATGAGGAGATTG
AAGCAGATGGCGCTAATTATCAGCTCGAAATGATGAGATGCTTGAGAGAGGTTAATGTTG
ATAATAACACTGTTGGATGGTACCAATCAACTTTGTTGGGTTCTTTTCAGACAGTAGAAC
TGATTGAGACGTTTATGAATTACCAGGAGAACATAAGACGATGTGTGTGCATTATCTATG
ATCCCTCAAGGTCCAATCAAGGTGTCTTAGCTCTCAAGGCCTTGAAGCTTTCTGATTCTT
TTATGGAACTTTATCGCAACAACAATTTTACTGGAGAGAAGTTGAGGGAGAAAAATTTGT
CATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTGTCAAACTCTGCCCTTATCAGCG
CCTTTATGACAGAGCTGGAAGCAGATACACCGGTGACCCAGTGTGATTATGATCGGCTAC
AATTGTCAACCAATCCATATATGGAGAGGAATCTAGAATTTTTGATTGAATGCATGGATG
ACTTGTCAATGGAACAACAAAAGTTCCAATTCTACTATCGCAACCTGTCACGTCAACAAG
GACAGCAGCAGGCATGGCTTCAGAAGAGAAGGGCAGAGAACATGGCTCGTAAAACTGCAG
GAGAAGACCCCTTGCCCGAGGAGGATCCTGCAAACCCCATCTTTAAGCCAATCCCTGAGC
CATCACGGTTGGATAGCTTTCTTATAACAAATCAAATTTCCAACTACTGCAACCAGATTA
ATGGGGTTGCTGGACAGAGCTTCAGCAGATTGTACTTGATGAAGGCATTACATGAGAATT
GATCGGGAAGTTCTGTAAAGATAGTTAATTATTCATCGCCACTCATCAGTAGGAATATTT
CACTTGAATCTTAAACAGATTATCCTGCATAGACTGGTCCCCCAGATTGAGAGACGAAGA
TTCAATCCAGAGCTTTGTGGTCTTGTTTCATTATTCTCTATATTTCCATTATTTTTGTTC
TAGATTTCACACAGCCTGCTTGAGAAGCAATTTTGGATATAAAAGTTAAGAAGCTTTTAT
ATGAAGTAGTGTTTTTCATATGAATGCCAAGTAACTGTGAATTGCACTGGGCCTTGCCCT
GT