Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_05s0062g00250.t01
CDS Infomation

cds chromosome:12X:5:18409831:18411279:1 gene:VIT_05s0062g00250 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6I4C9]
Sequence

ATGGGGTTTTCTTCATATGAGTATTCAGTTTTGGTGTTGGTTTTGGCAATGATGGTGGCT
ACTGCCTCTGCTAGTAACTTCTATCAAGACTTTGACATAACATGGGGCGATCATCGCGCT
AAGATGTTCAATGGAGGGCAGCTTCTCTCTCTGTCCCTCGACAAGGTCTCTGGCTCTGGC
TTCCAGTCCAAGCGAGAGTATCTATTTGGGAGGATTGATATGCAACTCAAGCTTGTTGCT
GGCAACTCTGCTGGCACTGTCACTGCCTACTATTTGTCGTCTCAGGGACCGACACACGAT
GAGATCGACTTCGAGTTCTTAGGAAACCTTAGTGGGGATCCATATATCCTGCATACTAAT
ATGTTCACTCAAGGGAAAGGGAACAGGGAGCAACAGTTCTATCTCTGGTTCGACCCCACT
AGAAATTTCCACACCTATTCTGTCATCTGGAACCCCCAGCAGATCATTTTCTTGGTGGAT
AATACTCCCATAAGACTATTCAGAAATGCAGAATCAATGGGTGTTCCCTTCCCCAAGAAC
CAACCAATGAGAATTTACTCGAGCCTATGGAATGCGGATGACTGGGCCACAAGAGGAGGG
TTGGTGAAAACTGATTGGTCCAAAGCCCCCTTTACAGCATACTACAGGAACTTCAGAGCC
TACACCTCCACCTCCTCAAACTCATTCTCTAATAGTGCATGGCAGTTCCAAGAGCTTGAT
GCCAACAGCCGAAGACGACTGAGATGGGTTCAGAAAAATTTCATGATTTACAACTATTGC
ACCGACTACAAACGCTTCCCTCAAGGCCTTCCTCCTGAGTGTAAAAACTCAAAAGTTTAG

Peptide Sequence

PEP ID

VIT_05s0062g00250.t01
PEP Infomation

pep chromosome:12X:5:18409831:18411279:1 gene:VIT_05s0062g00250 transcript:VIT_05s0062g00250.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6I4C9]
Sequence

MGFSSYEYSVLVLVLAMMVATASASNFYQDFDITWGDHRAKMFNGGQLLSLSLDKVSGSG
FQSKREYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTN
MFTQGKGNREQQFYLWFDPTRNFHTYSVIWNPQQIIFLVDNTPIRLFRNAESMGVPFPKN
QPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFRAYTSTSSNSFSNSAWQFQELD
ANSRRRLRWVQKNFMIYNYCTDYKRFPQGLPPECKNSKV

Transcript Sequence

Transcript ID

VIT_05s0062g00250.t01
Transcript Infomation

cdna chromosome:12X:5:18409831:18411279:1 gene:VIT_05s0062g00250 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6I4C9]
Sequence

AAACATGGGGTTTTCTTCATATGAGTATTCAGTTTTGGTGTTGGTTTTGGCAATGATGGT
GGCTACTGCCTCTGCTAGTAACTTCTATCAAGACTTTGACATAACATGGGGCGATCATCG
CGCTAAGATGTTCAATGGAGGGCAGCTTCTCTCTCTGTCCCTCGACAAGGTCTCTGGCTC
TGGCTTCCAGTCCAAGCGAGAGTATCTATTTGGGAGGATTGATATGCAACTCAAGCTTGT
TGCTGGCAACTCTGCTGGCACTGTCACTGCCTACTATTTGTCGTCTCAGGGACCGACACA
CGATGAGATCGACTTCGAGTTCTTAGGAAACCTTAGTGGGGATCCATATATCCTGCATAC
TAATATGTTCACTCAAGGGAAAGGGAACAGGGAGCAACAGTTCTATCTCTGGTTCGACCC
CACTAGAAATTTCCACACCTATTCTGTCATCTGGAACCCCCAGCAGATCATTTTCTTGGT
GGATAATACTCCCATAAGACTATTCAGAAATGCAGAATCAATGGGTGTTCCCTTCCCCAA
GAACCAACCAATGAGAATTTACTCGAGCCTATGGAATGCGGATGACTGGGCCACAAGAGG
AGGGTTGGTGAAAACTGATTGGTCCAAAGCCCCCTTTACAGCATACTACAGGAACTTCAG
AGCCTACACCTCCACCTCCTCAAACTCATTCTCTAATAGTGCATGGCAGTTCCAAGAGCT
TGATGCCAACAGCCGAAGACGACTGAGATGGGTTCAGAAAAATTTCATGATTTACAACTA
TTGCACCGACTACAAACGCTTCCCTCAAGGCCTTCCTCCTGAGTGTAAAAACTCAAAAGT
TTAGTCTCTGGAAAACAGGATAAGGATCTCTACTAAAAGAAAGAGTTGAGCTTGTATTAT
ATTT