Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_05s0062g00240.t01
CDS Infomation

cds chromosome:12X:5:18396922:18398527:1 gene:VIT_05s0062g00240 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6I4C8]
Sequence

ATGGGGTCTTCTTCAAATGGGTATTCAGTGTTTTTGTTGCTTTTTGCAGTGGTGGTGGCT
ACTGCCTCCGCTAGTAACTTCTATCAAGACTTTGACCTTACATGGGGTGATAATCGTGCT
AAGATCTTCAATGGAGGACAGCTGCTGTCTCTCTCCCTAGACCAGGCATCTGGCTCTGGG
TTTCAGTCCAAGAAGGAGTATCTGTTTGGGAGGATTGACATGCAGCTCAAGCTTGTCGCT
GGCAACTCTGCTGGCACCGTCACTGCCTACTACTTATCTTCTCAAGGGTCAACCCATGAT
GAGATTGACTTCGAGTTCCTGGGAAACCTGAGTGGAGATCCTTACATCCTTCATACCAAT
GTATTCACTCAAGGGAAGGGCAACAGGGAGCAGCAATTCTACCTCTGGTTCGACCCCACC
CGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATTTTCTTGGTGGAC
AACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAATGGGAGTTCCCTTCCCAAAGAAC
CAGCCCATGAGGATATACTCAAGCCTCTGGAACGCGGATGACTGGGCCACAAGAGGAGGG
TTGGTGAAAACTGACTGGTCCAAGGCACCCTTCACAGCATACTACCGGAACTTCAGAGCC
AACTCCTCGACCCCCACAAGTTCATTCCCTGACAGTACCTTCCAGACCCAAGAACTCGAT
TCCTACAGCAGAAGAAGGCTGAGATGGGTTCAGAAGAACTTCATGATTTACAACTACTGC
ACTGATCTCAAACGCTTTCCTCAAGGTGTCCCTGCTGAGTGTAAGCGCTCAAGGTTTAAT
CTCTAG

Peptide Sequence

PEP ID

VIT_05s0062g00240.t01
PEP Infomation

pep chromosome:12X:5:18396922:18398527:1 gene:VIT_05s0062g00240 transcript:VIT_05s0062g00240.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6I4C8]
Sequence

MGSSSNGYSVFLLLFAVVVATASASNFYQDFDLTWGDNRAKIFNGGQLLSLSLDQASGSG
FQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGSTHDEIDFEFLGNLSGDPYILHTN
VFTQGKGNREQQFYLWFDPTRNFHTYSIIWTARHIIFLVDNVPIRLFKNAESMGVPFPKN
QPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFRANSSTPTSSFPDSTFQTQELD
SYSRRRLRWVQKNFMIYNYCTDLKRFPQGVPAECKRSRFNL

Transcript Sequence

Transcript ID

VIT_05s0062g00240.t01
Transcript Infomation

cdna chromosome:12X:5:18396922:18398527:1 gene:VIT_05s0062g00240 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6I4C8]
Sequence

CATCCAATTCTACAAAACCCTCTCTTCTCTTCTCTTCTCACAAAATGGGGTCTTCTTCAA
ATGGGTATTCAGTGTTTTTGTTGCTTTTTGCAGTGGTGGTGGCTACTGCCTCCGCTAGTA
ACTTCTATCAAGACTTTGACCTTACATGGGGTGATAATCGTGCTAAGATCTTCAATGGAG
GACAGCTGCTGTCTCTCTCCCTAGACCAGGCATCTGGCTCTGGGTTTCAGTCCAAGAAGG
AGTATCTGTTTGGGAGGATTGACATGCAGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCA
CCGTCACTGCCTACTACTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGT
TCCTGGGAAACCTGAGTGGAGATCCTTACATCCTTCATACCAATGTATTCACTCAAGGGA
AGGGCAACAGGGAGCAGCAATTCTACCTCTGGTTCGACCCCACCCGTAACTTCCACACCT
ATTCCATCATCTGGACCGCCCGGCACATCATTTTCTTGGTGGACAACGTTCCCATAAGGC
TATTCAAGAATGCAGAATCAATGGGAGTTCCCTTCCCAAAGAACCAGCCCATGAGGATAT
ACTCAAGCCTCTGGAACGCGGATGACTGGGCCACAAGAGGAGGGTTGGTGAAAACTGACT
GGTCCAAGGCACCCTTCACAGCATACTACCGGAACTTCAGAGCCAACTCCTCGACCCCCA
CAAGTTCATTCCCTGACAGTACCTTCCAGACCCAAGAACTCGATTCCTACAGCAGAAGAA
GGCTGAGATGGGTTCAGAAGAACTTCATGATTTACAACTACTGCACTGATCTCAAACGCT
TTCCTCAAGGTGTCCCTGCTGAGTGTAAGCGCTCAAGGTTTAATCTCTAGAACAGTATGG
GTGGAGTTTATACAAGGGTGAGGCGTGAATATTATTCTTTTGTTGTTTCCTCTCCATCAT
GGGCTTGGTGCTTATAAGTCATAAGTTACGGTACAAATAAATTATTCTTTGCTTTGTATG
TAAGGGTTAATTATTGTCATATATCAACCTGTTTTTGTATTTCAAATAATAATATAATAA
ATTATATGGTGTT