Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Vitis vinifera

CDS Sequence

CDS ID	VIT_05s0020g04560.t01
CDS Infomation	cds chromosome:12X:5:6369598:6377026:-1 gene:VIT_05s0020g04560 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HDW7]
Sequence	ATGGCTTTGGAGCTCGTACCAATAGGGACCATCTTGGCTGTGTTAACGAACCAAGTCCTT AAGACAGCTCAAGCTGCAAAGGATGTTCTTATTGGGAAGGAGTGTTTCAAGGTTCTGTCC AAGCACCTCTTTGATATTGAACCCGTCTTAAAGGAATTGCAGCTTCAAAAACTGAATGAT TCTCAAGCTGCAAAGCAAGCTCTAGAAAACCTAGAAGAAGATGTCAAGAAAGCTAACAAC TTGGTAGAGAGGTACAAAAACTGTGCCCGTTTCTACTTGCTGTTCAAATGCCGGCACATT GTCAAGGAGGTCGAAGAAGTCACAAGGGATATTGGAAGGTCTTTGGCTGCTTTATCCCTT GCAAACACTGAAGTCCTGGCAGGGATATCTGACCAGGTGAACAGGTTACAGAATGAGATG CAAAGAGTGGAATTTGAGGCCTCACAATCTCAGATCAAAATTGTTGACAAGTTGAATCAG GGTATCAATGATGCAAAACTTGACCAGGATTTTGCAAATGACATGCTTGAAGAGATAGCA ATGGCAGTTGGGGTACCGGTTGAGCCGTCAGAGATAAGCAAAGAGCTAAAAAACCTCAGA AAGGAAAAGGAAGAAACTGCCAACCGGAAAGAAAGGGCAGAAGCTTTCTTCCTGGAGCAG GTTATCGAGCTGCTTTCTCGAGCAGATGCTGCAAAAGATTTTGAGCAAGTTAAAGAGCAT TATGTTCAGAGGGCTCAGGTCATAGAGCGTTATGATTGCAGCAGAGAGGATATTACACCA CTAAAGACTTTCATTTGTCCTATAAGTCAAACTGTGATGGTTGATCCTGTCAACCTTTGC ACTGACACCACATGTGAGAGGGCAGCTATCAAAGCCTGGTTTGACCGTGGAGAGAAGACT GATCCAGAAACGGGTGATCTTCTGGGAGATTTTACTTTGAGGCCTAACCTTCGACTAAGA CAATCAATTGAAGAGTGGAGGGAAATCAATTACTGCCTTAAAATCAGATCTTCCAAGGAA AAGCTGCTATCAGGTGTAGACCTCTCTGTGGAAGCAGCCCTCATCCAAATGCAGGATCTT ATGAGAGAGAATTCCATTAACAAAGACTGGATTACCATAGGAGGGCTTACTGCTATTATT GTTTCTATCCTTGGAAGCTCCCACAACAAAGATGTGAAGAGAAATATTTTAATTACCTTA AAGTATGTTGTAGAAGGACATGCAAGAAATAAGGAAAAAGTGGTTGAGTTCAAGGGGTTG GATCACATCATTCCCTGCTTAGGGCGTGACTCAAGCATATCAAAGGCTGCAGTTGAATTG TTATATGAGTTATTGCAAGATAAATCTGGTTGGAACGTGTCTGTTTGTAGGAAACTCTCA CAGACATGTAGTGCAATTCTTTTCCTTGTAACCCTCCTGAAAGGTCCAGTCAAGGAGTCA GCGGAGAAAGCTGAAAAAATCTTAATGAAGCTTTGTGATGAAGATGAGGAGAACATTTCT CGTGCTGCTAGGGCAGACTGGTATAAGCCACTTATTGATCGCATTATTCGAGGCTCTGAG ACTTCAAGGATATCAAAGGTGAGAACACTTGTTAATATGGAACTTGTTGACCAGAATATA ACGCTCCTTGGCAAGGAAGGGGTAATACCTCCCTTGCTTGAAATGGCATCTGGCAATGTG GAATCACAAGAAGCATCCTTATCTGCACTGGTTAAGCTATCAGGTTGTCATGCCAACAAA GAGCTCATTGCCGCTGCTGGTGGGGTTCCTATTATTGTGGACTTAATATTCTCTCCCCAC ACTGCAATAATCATTGCTAGATGTTGTGAAGTCTTGGAGAAACTTACTTCAAATGATGAT GGAATTAAATTCCTTGTTGACAAAAATAAGAAGCAACTTGAGATAGAGCAGATAATAAAG AAGTTGTTAGCATTTTTACAAAGTCCAAACTCATCCAACATCATGCTGAGGCCTGCTTTA CGTGCACTTCTCGGGATTTGTAAGTCTGAAGCAAGGTTTATTAAGACAGCAGTTCTTACT GCCAATGGTGTTTCCCTCATCCTTCCTCTTCTTGATGGCTCTGACCCAGAAATTAGAGAA ATTGCCATAAATCTTCTGTCCCTCTTCTCTCAGCATGAACCAGAAGGCGTTGTGGAATAT CTTCTCAAGCCAAAGAGGTTGGAGGCTTTAGTGGGGTTTCTTGAGAATGGTGATAAGGCT GATGTACAGATGGCAGCAGCTGGTTTATTGGCCAATCTTCCAAAATCAGAAGTACCACTC ACAATGAAGTTAATCGAATTAGAAGGGTTGAATGCAATCATAAGCATCTTAAGATCTGGG ACCATGGGAGCAAAAGAAAATGCTCTAACTGCACTCTTCAGGTTCACGGATCCTGCAAAT CTAGACTCGCAGCGAAAGGTGGTTGAACTAGGAGCATATCCTTTGCTTGTAAGATTTCTC AGGGTTGGTTCGGAAACAGCAAAGGCAAGAGCAGCAGCCCTCATTGGTAATCTTTCCACA AGCAGTCTAGAACTTGCAGTTGTGCCTAAACCAGCTAGATGCTTGTGTTTCAGGTCATCA CGCGTCCCTTTGTGCCCTGCACATGGAGGTATCTGCAGTGTGGAGACAACTTTTTGTCTA TTGAAGGCAGATGCTTTGGCTGGGCTGGTAGCACTCTTGCATGAAGAGATTGATGCAACT GCTTATGAAGCAATTCAGACCCTTTCTACACTGGTGCGGGAAGACTCTCCTCAGAGAGGG GCCAATGTCTTGCATGAAGCTGATGCCATTAATCCCACACTGGAGATTTTGAATTGGGGA CCGGGTCCTCTGAAGGAACAGGCTTTGGTACTATTGGAGAAAGTCCTTACAGTGAAGGAA ATGGTGGAAAAGTATGGATCAATAGCTCGGTTACGTCTTGTCGATATTACTGGTAGGATT AACATTCATGAGGATGGGAATCTTAGGAGGAAGGCTGCTGGAGTCTTAGCTCTCCTCGAA CGCTATTCGGGATTTGATACATCATCTCTTGCTACAGGACTCAATGGGTGA

Peptide Sequence

PEP ID	VIT_05s0020g04560.t01
PEP Infomation	pep chromosome:12X:5:6369598:6377026:-1 gene:VIT_05s0020g04560 transcript:VIT_05s0020g04560.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HDW7]
Sequence	MALELVPIGTILAVLTNQVLKTAQAAKDVLIGKECFKVLSKHLFDIEPVLKELQLQKLND SQAAKQALENLEEDVKKANNLVERYKNCARFYLLFKCRHIVKEVEEVTRDIGRSLAALSL ANTEVLAGISDQVNRLQNEMQRVEFEASQSQIKIVDKLNQGINDAKLDQDFANDMLEEIA MAVGVPVEPSEISKELKNLRKEKEETANRKERAEAFFLEQVIELLSRADAAKDFEQVKEH YVQRAQVIERYDCSREDITPLKTFICPISQTVMVDPVNLCTDTTCERAAIKAWFDRGEKT DPETGDLLGDFTLRPNLRLRQSIEEWREINYCLKIRSSKEKLLSGVDLSVEAALIQMQDL MRENSINKDWITIGGLTAIIVSILGSSHNKDVKRNILITLKYVVEGHARNKEKVVEFKGL DHIIPCLGRDSSISKAAVELLYELLQDKSGWNVSVCRKLSQTCSAILFLVTLLKGPVKES AEKAEKILMKLCDEDEENISRAARADWYKPLIDRIIRGSETSRISKVRTLVNMELVDQNI TLLGKEGVIPPLLEMASGNVESQEASLSALVKLSGCHANKELIAAAGGVPIIVDLIFSPH TAIIIARCCEVLEKLTSNDDGIKFLVDKNKKQLEIEQIIKKLLAFLQSPNSSNIMLRPAL RALLGICKSEARFIKTAVLTANGVSLILPLLDGSDPEIREIAINLLSLFSQHEPEGVVEY LLKPKRLEALVGFLENGDKADVQMAAAGLLANLPKSEVPLTMKLIELEGLNAIISILRSG TMGAKENALTALFRFTDPANLDSQRKVVELGAYPLLVRFLRVGSETAKARAAALIGNLST SSLELAVVPKPARCLCFRSSRVPLCPAHGGICSVETTFCLLKADALAGLVALLHEEIDAT AYEAIQTLSTLVREDSPQRGANVLHEADAINPTLEILNWGPGPLKEQALVLLEKVLTVKE MVEKYGSIARLRLVDITGRINIHEDGNLRRKAAGVLALLERYSGFDTSSLATGLNG

Transcript Sequence

Transcript ID	VIT_05s0020g04560.t01
Transcript Infomation	cdna chromosome:12X:5:6369598:6377026:-1 gene:VIT_05s0020g04560 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HDW7]
Sequence	AGCGGAGCTTGCTCAAGGGGAGAGAGATATGCACTACAAGATCATATCTTCAATTTATCA GTCATGATATAAACCAACTTTTTTGGTTTCAATAGCACATTTTGGACTTGAATTGTTAGG ATGGCTTTGGAGCTCGTACCAATAGGGACCATCTTGGCTGTGTTAACGAACCAAGTCCTT AAGACAGCTCAAGCTGCAAAGGATGTTCTTATTGGGAAGGAGTGTTTCAAGGTTCTGTCC AAGCACCTCTTTGATATTGAACCCGTCTTAAAGGAATTGCAGCTTCAAAAACTGAATGAT TCTCAAGCTGCAAAGCAAGCTCTAGAAAACCTAGAAGAAGATGTCAAGAAAGCTAACAAC TTGGTAGAGAGGTACAAAAACTGTGCCCGTTTCTACTTGCTGTTCAAATGCCGGCACATT GTCAAGGAGGTCGAAGAAGTCACAAGGGATATTGGAAGGTCTTTGGCTGCTTTATCCCTT GCAAACACTGAAGTCCTGGCAGGGATATCTGACCAGGTGAACAGGTTACAGAATGAGATG CAAAGAGTGGAATTTGAGGCCTCACAATCTCAGATCAAAATTGTTGACAAGTTGAATCAG GGTATCAATGATGCAAAACTTGACCAGGATTTTGCAAATGACATGCTTGAAGAGATAGCA ATGGCAGTTGGGGTACCGGTTGAGCCGTCAGAGATAAGCAAAGAGCTAAAAAACCTCAGA AAGGAAAAGGAAGAAACTGCCAACCGGAAAGAAAGGGCAGAAGCTTTCTTCCTGGAGCAG GTTATCGAGCTGCTTTCTCGAGCAGATGCTGCAAAAGATTTTGAGCAAGTTAAAGAGCAT TATGTTCAGAGGGCTCAGGTCATAGAGCGTTATGATTGCAGCAGAGAGGATATTACACCA CTAAAGACTTTCATTTGTCCTATAAGTCAAACTGTGATGGTTGATCCTGTCAACCTTTGC ACTGACACCACATGTGAGAGGGCAGCTATCAAAGCCTGGTTTGACCGTGGAGAGAAGACT GATCCAGAAACGGGTGATCTTCTGGGAGATTTTACTTTGAGGCCTAACCTTCGACTAAGA CAATCAATTGAAGAGTGGAGGGAAATCAATTACTGCCTTAAAATCAGATCTTCCAAGGAA AAGCTGCTATCAGGTGTAGACCTCTCTGTGGAAGCAGCCCTCATCCAAATGCAGGATCTT ATGAGAGAGAATTCCATTAACAAAGACTGGATTACCATAGGAGGGCTTACTGCTATTATT GTTTCTATCCTTGGAAGCTCCCACAACAAAGATGTGAAGAGAAATATTTTAATTACCTTA AAGTATGTTGTAGAAGGACATGCAAGAAATAAGGAAAAAGTGGTTGAGTTCAAGGGGTTG GATCACATCATTCCCTGCTTAGGGCGTGACTCAAGCATATCAAAGGCTGCAGTTGAATTG TTATATGAGTTATTGCAAGATAAATCTGGTTGGAACGTGTCTGTTTGTAGGAAACTCTCA CAGACATGTAGTGCAATTCTTTTCCTTGTAACCCTCCTGAAAGGTCCAGTCAAGGAGTCA GCGGAGAAAGCTGAAAAAATCTTAATGAAGCTTTGTGATGAAGATGAGGAGAACATTTCT CGTGCTGCTAGGGCAGACTGGTATAAGCCACTTATTGATCGCATTATTCGAGGCTCTGAG ACTTCAAGGATATCAAAGGTGAGAACACTTGTTAATATGGAACTTGTTGACCAGAATATA ACGCTCCTTGGCAAGGAAGGGGTAATACCTCCCTTGCTTGAAATGGCATCTGGCAATGTG GAATCACAAGAAGCATCCTTATCTGCACTGGTTAAGCTATCAGGTTGTCATGCCAACAAA GAGCTCATTGCCGCTGCTGGTGGGGTTCCTATTATTGTGGACTTAATATTCTCTCCCCAC ACTGCAATAATCATTGCTAGATGTTGTGAAGTCTTGGAGAAACTTACTTCAAATGATGAT GGAATTAAATTCCTTGTTGACAAAAATAAGAAGCAACTTGAGATAGAGCAGATAATAAAG AAGTTGTTAGCATTTTTACAAAGTCCAAACTCATCCAACATCATGCTGAGGCCTGCTTTA CGTGCACTTCTCGGGATTTGTAAGTCTGAAGCAAGGTTTATTAAGACAGCAGTTCTTACT GCCAATGGTGTTTCCCTCATCCTTCCTCTTCTTGATGGCTCTGACCCAGAAATTAGAGAA ATTGCCATAAATCTTCTGTCCCTCTTCTCTCAGCATGAACCAGAAGGCGTTGTGGAATAT CTTCTCAAGCCAAAGAGGTTGGAGGCTTTAGTGGGGTTTCTTGAGAATGGTGATAAGGCT GATGTACAGATGGCAGCAGCTGGTTTATTGGCCAATCTTCCAAAATCAGAAGTACCACTC ACAATGAAGTTAATCGAATTAGAAGGGTTGAATGCAATCATAAGCATCTTAAGATCTGGG ACCATGGGAGCAAAAGAAAATGCTCTAACTGCACTCTTCAGGTTCACGGATCCTGCAAAT CTAGACTCGCAGCGAAAGGTGGTTGAACTAGGAGCATATCCTTTGCTTGTAAGATTTCTC AGGGTTGGTTCGGAAACAGCAAAGGCAAGAGCAGCAGCCCTCATTGGTAATCTTTCCACA AGCAGTCTAGAACTTGCAGTTGTGCCTAAACCAGCTAGATGCTTGTGTTTCAGGTCATCA CGCGTCCCTTTGTGCCCTGCACATGGAGGTATCTGCAGTGTGGAGACAACTTTTTGTCTA TTGAAGGCAGATGCTTTGGCTGGGCTGGTAGCACTCTTGCATGAAGAGATTGATGCAACT GCTTATGAAGCAATTCAGACCCTTTCTACACTGGTGCGGGAAGACTCTCCTCAGAGAGGG GCCAATGTCTTGCATGAAGCTGATGCCATTAATCCCACACTGGAGATTTTGAATTGGGGA CCGGGTCCTCTGAAGGAACAGGCTTTGGTACTATTGGAGAAAGTCCTTACAGTGAAGGAA ATGGTGGAAAAGTATGGATCAATAGCTCGGTTACGTCTTGTCGATATTACTGGTAGGATT AACATTCATGAGGATGGGAATCTTAGGAGGAAGGCTGCTGGAGTCTTAGCTCTCCTCGAA CGCTATTCGGGATTTGATACATCATCTCTTGCTACAGGACTCAATGGGTGACAATTTTTG CTTCCTGCTGAGAACATATAGCTTGCTTTTAGATTTTGCAGTGAACTGTTTATTGACTCT CCACTGCATCTGATCAGTATCCTTTGAAAACAGACTTGGAGGTGGATGGATTCTGAATCC TCAGCAGAAATCAATTATAAAATTCAAAGACAAATATTTTGATTTAGTCTGTTCTTTGAG TCTGTAAAATTTTGTATGTCTCTATTAGCCCCATGTATTGGTCTAGATTATTCTGTGCTT TAAAAATAATAAATATATATGTGATAAAAAA