Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_05s0020g03470.t01
CDS Infomation

cds chromosome:12X:5:5255074:5259707:1 gene:VIT_05s0020g03470 gene_biotype:protein_coding transcript_biotype:protein_coding description:FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6HDQ4]
Sequence

ATGGGGTCCATCCCCGATCCCGGTGATATTTCCGGCGAGTTGAATCAGCCCAGCTTCGAC
GACTTCCAGAAGCAGACGTCTCTCATGACTAGTTGTACTCTTCTCTGGAAAGAACTCTCC
GATCACTTCACTTCCTTGGAGCAAAATCTCCAAAAGAAATCTGAAGCTCTCAAGAACAAG
TTCCAAACCCTGGATCACCACACCAAGGAGTCCCTAGGCGTGCTCAAGAAGCGTGAGGTC
ACGATCGACGGCTCCGTGGAGATCGCACTTGGAAAAGTCGAGGAGAGCAGGGAAGCGGCA
TTGATCGCTCTCCTAAAAGGTGCGCAGGATGGGGAGGTCGATGACAGCGAGGGTTTGTTG
TTGAAATTGAAGTCGTTTTGCTTGAAAATGGACTCCAAGGAGTTTTGGAGGTTCATAACC
GCGAGGAAGAAGGAATTGGATGCGCTTAGGGCCCAGACACCGGAGGCTTTAGCCGAATGT
GTGGATCCGGCGAAGTTCGTGTTGGAGGCAATATCGGAGGTCTTTCCAGTGGATAAGAGA
GTCGAAAAGAGCGAGAGGTCGAATGATTTGGGGTGGGCTTGTGTTTTGGTGCTGGAGTCT
CTGATACCGGTAGTTGTGGATCCGGTGCTGGGGAAGTCGCGGCTTTTGGTGACTCCAAGC
GTGAAAGAACGAGCGAAGGATATCGCTGAGACATGGAAGGCGAGTTTGGACCAGCGCGGA
GGGATTGAGAACGTTAAAACGCCGGACGTGCATACATTTCTGCAGCATTTGGTGACCTTT
GGGATTGTGAAGGAGGAAGATGTTGATTTGTACCGGAAGCTTGTTGTTGGGTCTGCGTGG
CGGAAGCAGATGCCTAAGCTTGCTGTTTCGCTTGGGCTTGGTGATAAAATGGCCGATATG
ATTGAAGAATTAGTCAATAGGGGACAACAAGTTGATGCTGTGCACTTTACATACGAAGTT
GGGCTTGTGGACAAGTTTCCCCCTGTACCCTTGCTGAAGGCTTTTCTGAGAGATTCAAAG
AAGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGAACCTAGCT
GGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGCATTGAAGAATACAAACTG
GAAGCTGAGTTCCCTCCAGAAAACCTTAAGAAGCGCCTTGAACAGCTAGAGAAAGCAAAA
ACTGACAAGAAAAGGCCAGCTGCAGTCCCTGCCAACAAACGAACACGAGCAAGCAATGGT
GGGCCCATGCCTCCAGCCAAGGCTGGCCGCTTGACAAATGCATACGTATCATCTTTCCCA
GCTGCTCCTACATTCATCCGGTCTCCCTCTCACACTCAGTACCCTGCTGCAGTCCCTGCA
TACCCATATGACAGGCCAGCTGCACCTGCCATGTATGGCAGCAGGAGTCCACCAGCCAAC
CCTTATGCTTACTCGCCGGAAGCTGCCCCTCCTCTTGCTGGATCATATCCTGGAGCTCCC
ATCAACTATCCTGCATATGGAGGCTATGGCAATGGTATGGCACCAGCTTATCAGCAGGCT
TACTACTGA

Peptide Sequence

PEP ID

VIT_05s0020g03470.t01
PEP Infomation

pep chromosome:12X:5:5255074:5259707:1 gene:VIT_05s0020g03470 transcript:VIT_05s0020g03470.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6HDQ4]
Sequence

MGSIPDPGDISGELNQPSFDDFQKQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKNK
FQTLDHHTKESLGVLKKREVTIDGSVEIALGKVEESREAALIALLKGAQDGEVDDSEGLL
LKLKSFCLKMDSKEFWRFITARKKELDALRAQTPEALAECVDPAKFVLEAISEVFPVDKR
VEKSERSNDLGWACVLVLESLIPVVVDPVLGKSRLLVTPSVKERAKDIAETWKASLDQRG
GIENVKTPDVHTFLQHLVTFGIVKEEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMADM
IEELVNRGQQVDAVHFTYEVGLVDKFPPVPLLKAFLRDSKKAATSILEDPNNSGRAVNLA
GRKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKAKTDKKRPAAVPANKRTRASNG
GPMPPAKAGRLTNAYVSSFPAAPTFIRSPSHTQYPAAVPAYPYDRPAAPAMYGSRSPPAN
PYAYSPEAAPPLAGSYPGAPINYPAYGGYGNGMAPAYQQAYY

Transcript Sequence

Transcript ID

VIT_05s0020g03470.t01
Transcript Infomation

cdna chromosome:12X:5:5255074:5259707:1 gene:VIT_05s0020g03470 gene_biotype:protein_coding transcript_biotype:protein_coding description:FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6HDQ4]
Sequence

CTTTCATTTTAGGGTTTCTGTCGTCTTCTTCTCTCTCTCATCTGCATCTGAGTCGCAGAC
CAACCATGGGGTCCATCCCCGATCCCGGTGATATTTCCGGCGAGTTGAATCAGCCCAGCT
TCGACGACTTCCAGAAGCAGACGTCTCTCATGACTAGTTGTACTCTTCTCTGGAAAGAAC
TCTCCGATCACTTCACTTCCTTGGAGCAAAATCTCCAAAAGAAATCTGAAGCTCTCAAGA
ACAAGTTCCAAACCCTGGATCACCACACCAAGGAGTCCCTAGGCGTGCTCAAGAAGCGTG
AGGTCACGATCGACGGCTCCGTGGAGATCGCACTTGGAAAAGTCGAGGAGAGCAGGGAAG
CGGCATTGATCGCTCTCCTAAAAGGTGCGCAGGATGGGGAGGTCGATGACAGCGAGGGTT
TGTTGTTGAAATTGAAGTCGTTTTGCTTGAAAATGGACTCCAAGGAGTTTTGGAGGTTCA
TAACCGCGAGGAAGAAGGAATTGGATGCGCTTAGGGCCCAGACACCGGAGGCTTTAGCCG
AATGTGTGGATCCGGCGAAGTTCGTGTTGGAGGCAATATCGGAGGTCTTTCCAGTGGATA
AGAGAGTCGAAAAGAGCGAGAGGTCGAATGATTTGGGGTGGGCTTGTGTTTTGGTGCTGG
AGTCTCTGATACCGGTAGTTGTGGATCCGGTGCTGGGGAAGTCGCGGCTTTTGGTGACTC
CAAGCGTGAAAGAACGAGCGAAGGATATCGCTGAGACATGGAAGGCGAGTTTGGACCAGC
GCGGAGGGATTGAGAACGTTAAAACGCCGGACGTGCATACATTTCTGCAGCATTTGGTGA
CCTTTGGGATTGTGAAGGAGGAAGATGTTGATTTGTACCGGAAGCTTGTTGTTGGGTCTG
CGTGGCGGAAGCAGATGCCTAAGCTTGCTGTTTCGCTTGGGCTTGGTGATAAAATGGCCG
ATATGATTGAAGAATTAGTCAATAGGGGACAACAAGTTGATGCTGTGCACTTTACATACG
AAGTTGGGCTTGTGGACAAGTTTCCCCCTGTACCCTTGCTGAAGGCTTTTCTGAGAGATT
CAAAGAAGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGAACC
TAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGCATTGAAGAATACA
AACTGGAAGCTGAGTTCCCTCCAGAAAACCTTAAGAAGCGCCTTGAACAGCTAGAGAAAG
CAAAAACTGACAAGAAAAGGCCAGCTGCAGTCCCTGCCAACAAACGAACACGAGCAAGCA
ATGGTGGGCCCATGCCTCCAGCCAAGGCTGGCCGCTTGACAAATGCATACGTATCATCTT
TCCCAGCTGCTCCTACATTCATCCGGTCTCCCTCTCACACTCAGTACCCTGCTGCAGTCC
CTGCATACCCATATGACAGGCCAGCTGCACCTGCCATGTATGGCAGCAGGAGTCCACCAG
CCAACCCTTATGCTTACTCGCCGGAAGCTGCCCCTCCTCTTGCTGGATCATATCCTGGAG
CTCCCATCAACTATCCTGCATATGGAGGCTATGGCAATGGTATGGCACCAGCTTATCAGC
AGGCTTACTACTGATAATAGACATGACTACTCTGAAGATGGTAACACTGATATGATGATG
ACCCCAATCTCATTTGCTTTTCTCAATGGTTTGTTTGTAATCACTAACCGCTTAATGGTA
GCGATATCTGTGTGTTAATCATGACATTTCCTTGCTTCTTGCTTCACTGAGGTGAGAAGT
TGTATTTCTAATGTTGATTGAAGTTGTAGTATTAGGGTGATTGTGGAAAGTAATTAGGGA
GGTAGCTTAACAAAGTCGAGGACTCAAGGTACCACCAACTTTAGTAGGACTTGTTGTAGA
AAGACTGCTTTTACTTCTCATTCAAGA