Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Vitis vinifera

CDS Sequence

CDS ID	VIT_05s0020g03170.t01
CDS Infomation	cds chromosome:12X:5:4935140:4939255:1 gene:VIT_05s0020g03170 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6HDN6]
Sequence	ATGGCGTCCACTTCAGAGACGATAGGGGGATTTTTTGAGAAAGTTTGTGGAAGTAATAGT AAGAAGTCGAAGGACAGGGAGGATGAAAGCCAGAAGATCGAAGGGAGAGTGGTGTTGATG AAGAAGAATGTGATGGACTTGAATGATAGCAAGGCCTCCTTGATTGACAGCGTTTATGAA TTGGTGGGCAAACACGTATCTCTGCAGCTAATCAGTGCTACTCATGCCGACCCAGAAAAC AATTTGGGAGGAAAAATTGGGAAGGCGACATGTTTGCAGAAATGGAATTGCACAGGTCCA GCAATAACAGCCAGAGAAACTGAATTTGCAGTTACATTTGACTGGGAAGAGGGGATGGGT GTTCCTGGAGCTCTCAGAGTCAGCAACCATCACCACAGTGAGTTCTACCTAAGTTCAGTC ACCTTAGAAGACGTTCCAGGACAGGGTCGGATCCATTTTGTGTGCAATTCTTGGGTTTTC CCCGTGCGATACACGAATGAGCGGGTGTTCTTCTCAAACAAGGCCTATCTTCCATGTCAT ACACCAGAGCCTTTACGCCAGTACAGGGAAGAAGAACTGGTGAAACTTCGTGGAAATGGA CAAGGTGAGCGCAAAACATGGGAAAGAATCTATGACTATGATGTCTACAATGATTTGGGA AATCCAGATAAGGGTCCAAGCCATGCACGCCCTATTCTGGGTGGATCTGAAGATTACCCT TATCCCCGCAGAGGAAGAACAGGGCGGGAAAGGACAAAAACCGATCCTTGCAGCGAGAAA AGATTGTCACTCCTACGTTTAGATATTTATGTTCCAAGGGATGAACGGTTTAGTCAGGTG AAGTTCTCAGATGTCCTTGCCTATGCTGTCAAATCCCTTGTTCAGGTATTGATCCCGGAG ATCAGATCTTTATTCGACAAGACTGTCAACGAATTTGACTCCTTTCAAGATGTACTGAAC ATCTATGAAGTAGGGATTAATGGACAAAATGGAGGAACACACGGTACAGTTAGGGACTGC ATATCATGGGAGTTTATCAGGGAACTCGCCCATTCAGATGTAGGATTTCATAAATTTCCA ATGCCTGATGTAATAAAAGAAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGA GAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAAGAGTTTCCCCCGGTC AGCAAGCTAGATATTAATAAATATGGCAATCAAACCAGTACAATAACCAAAGAGCATATC GAGAAAAACATGAATGGTCTCACTGTCGATCAAGCAATTAAGAACGACAAGCTGTTCATA TTAGATTATCATGATGCATTGATGCCATTCCTGAGCCGGATAAACTCAACTAGCACAAAG ACATATGCCACAAGAACACTCCTTTTCCTGAAAGAAGATGGGACATTGAAACCGTTGGCA ATTGAGTTAAGCTTACCACATCCACAAGGGGAAAGTTATGGAGCCACCAGCCAAGTCTAC ACTCCAGCAGAAGATGGTGTTGAAGGTTCAGTTTGGCAGCTCGCCAAAGCTTATGCTGCA GTGAATGATTCTGGCTACCATCAACTCATTAGTCACTGGTTGAACACCCATGCAGTAATA GAACCATTTGTGATTGCAACAAACAGACAATTGAGTGTGCTTCACCCCATATATAAGCTT CTGCATCCTCACTTCCGTGATACAATGAACATAAATGCCTTGGCCAGGCACATTCTCATC AATGCAGGTGGGTTTCTTGAGATGACAGTTTTTCCTGGTAAATATGCACTGGAAATGTCT GCTGTGATTTATAAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAG AGAGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGATAGAGGAT TACCCCTATGCTGTTGATGGGCTAGAAGTTTGGTCTGCAATTGAAACTTGGGTCACTGAA TACTGCTCGTTCTACTACCCTACAGATGACTTGATTCAATGTGACACCGAACTGCAGTCA TGGTGGATGGAGCTCCGCAACAAGGGTCATGGTGACAAGAAAGATGAGCCATGGTGGTCA GAGATGCAGACACTAGTTGATCTTACCAAAACATGCACAATTATCATTTGGGTGGCTTCT GCCCTCCATGCAGCTGTCAATTTTGGGCAATACCCTTATGCTGGCTACCTTCCAAACCGC CCAACCATAAGCCGCCGCTTCATGCCTGAGCCAGGCACTCCAGAGTATCAAGAGCTTGAG AGAAACCCTGACTTAGCCTTCCTGAAAACAATTACAGCCCAGCTACAAACCCTTCTTGGT GTGTCCCTAATAGAGATTTTGTCTCGGCATTCTACTGATGAGATTTACCTTGGGCAGAGA GACACTCCTGAATGGACTTCAGATGCTGAGCCCCTGGCGGCATTTGAGAGATTTGGCAGC AGGCTGAGGGGCATTGAAACAAGAATTAACCAAATGAACCAAGACAGGAGATGGAATAAC CGATTTGGGCCTGTTGAGATGCAATACACCTTGCTCTATCCCAACACCTCAGATTACTCA AGACAGGGTGGCCTCGCTGGCAAGGGAATTCCTAATAGTGTCTCAATCTAA

Peptide Sequence

PEP ID	VIT_05s0020g03170.t01
PEP Infomation	pep chromosome:12X:5:4935140:4939255:1 gene:VIT_05s0020g03170 transcript:VIT_05s0020g03170.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6HDN6]
Sequence	MASTSETIGGFFEKVCGSNSKKSKDREDESQKIEGRVVLMKKNVMDLNDSKASLIDSVYE LVGKHVSLQLISATHADPENNLGGKIGKATCLQKWNCTGPAITARETEFAVTFDWEEGMG VPGALRVSNHHHSEFYLSSVTLEDVPGQGRIHFVCNSWVFPVRYTNERVFFSNKAYLPCH TPEPLRQYREEELVKLRGNGQGERKTWERIYDYDVYNDLGNPDKGPSHARPILGGSEDYP YPRRGRTGRERTKTDPCSEKRLSLLRLDIYVPRDERFSQVKFSDVLAYAVKSLVQVLIPE IRSLFDKTVNEFDSFQDVLNIYEVGINGQNGGTHGTVRDCISWEFIRELAHSDVGFHKFP MPDVIKENTTAWRTDEEFGREMLAGVNPVIIRRLEEFPPVSKLDINKYGNQTSTITKEHI EKNMNGLTVDQAIKNDKLFILDYHDALMPFLSRINSTSTKTYATRTLLFLKEDGTLKPLA IELSLPHPQGESYGATSQVYTPAEDGVEGSVWQLAKAYAAVNDSGYHQLISHWLNTHAVI EPFVIATNRQLSVLHPIYKLLHPHFRDTMNINALARHILINAGGFLEMTVFPGKYALEMS AVIYKNWNFTEQGLPADLLKRGVAVEDPNYRHGLRLLIEDYPYAVDGLEVWSAIETWVTE YCSFYYPTDDLIQCDTELQSWWMELRNKGHGDKKDEPWWSEMQTLVDLTKTCTIIIWVAS ALHAAVNFGQYPYAGYLPNRPTISRRFMPEPGTPEYQELERNPDLAFLKTITAQLQTLLG VSLIEILSRHSTDEIYLGQRDTPEWTSDAEPLAAFERFGSRLRGIETRINQMNQDRRWNN RFGPVEMQYTLLYPNTSDYSRQGGLAGKGIPNSVSI

Transcript Sequence

Transcript ID	VIT_05s0020g03170.t01
Transcript Infomation	cdna chromosome:12X:5:4935140:4939255:1 gene:VIT_05s0020g03170 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6HDN6]
Sequence	ATGGCGTCCACTTCAGAGACGATAGGGGGATTTTTTGAGAAAGTTTGTGGAAGTAATAGT AAGAAGTCGAAGGACAGGGAGGATGAAAGCCAGAAGATCGAAGGGAGAGTGGTGTTGATG AAGAAGAATGTGATGGACTTGAATGATAGCAAGGCCTCCTTGATTGACAGCGTTTATGAA TTGGTGGGCAAACACGTATCTCTGCAGCTAATCAGTGCTACTCATGCCGACCCAGAAAAC AATTTGGGAGGAAAAATTGGGAAGGCGACATGTTTGCAGAAATGGAATTGCACAGGTCCA GCAATAACAGCCAGAGAAACTGAATTTGCAGTTACATTTGACTGGGAAGAGGGGATGGGT GTTCCTGGAGCTCTCAGAGTCAGCAACCATCACCACAGTGAGTTCTACCTAAGTTCAGTC ACCTTAGAAGACGTTCCAGGACAGGGTCGGATCCATTTTGTGTGCAATTCTTGGGTTTTC CCCGTGCGATACACGAATGAGCGGGTGTTCTTCTCAAACAAGGCCTATCTTCCATGTCAT ACACCAGAGCCTTTACGCCAGTACAGGGAAGAAGAACTGGTGAAACTTCGTGGAAATGGA CAAGGTGAGCGCAAAACATGGGAAAGAATCTATGACTATGATGTCTACAATGATTTGGGA AATCCAGATAAGGGTCCAAGCCATGCACGCCCTATTCTGGGTGGATCTGAAGATTACCCT TATCCCCGCAGAGGAAGAACAGGGCGGGAAAGGACAAAAACCGATCCTTGCAGCGAGAAA AGATTGTCACTCCTACGTTTAGATATTTATGTTCCAAGGGATGAACGGTTTAGTCAGGTG AAGTTCTCAGATGTCCTTGCCTATGCTGTCAAATCCCTTGTTCAGGTATTGATCCCGGAG ATCAGATCTTTATTCGACAAGACTGTCAACGAATTTGACTCCTTTCAAGATGTACTGAAC ATCTATGAAGTAGGGATTAATGGACAAAATGGAGGAACACACGGTACAGTTAGGGACTGC ATATCATGGGAGTTTATCAGGGAACTCGCCCATTCAGATGTAGGATTTCATAAATTTCCA ATGCCTGATGTAATAAAAGAAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGA GAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAAGAGTTTCCCCCGGTC AGCAAGCTAGATATTAATAAATATGGCAATCAAACCAGTACAATAACCAAAGAGCATATC GAGAAAAACATGAATGGTCTCACTGTCGATCAAGCAATTAAGAACGACAAGCTGTTCATA TTAGATTATCATGATGCATTGATGCCATTCCTGAGCCGGATAAACTCAACTAGCACAAAG ACATATGCCACAAGAACACTCCTTTTCCTGAAAGAAGATGGGACATTGAAACCGTTGGCA ATTGAGTTAAGCTTACCACATCCACAAGGGGAAAGTTATGGAGCCACCAGCCAAGTCTAC ACTCCAGCAGAAGATGGTGTTGAAGGTTCAGTTTGGCAGCTCGCCAAAGCTTATGCTGCA GTGAATGATTCTGGCTACCATCAACTCATTAGTCACTGGTTGAACACCCATGCAGTAATA GAACCATTTGTGATTGCAACAAACAGACAATTGAGTGTGCTTCACCCCATATATAAGCTT CTGCATCCTCACTTCCGTGATACAATGAACATAAATGCCTTGGCCAGGCACATTCTCATC AATGCAGGTGGGTTTCTTGAGATGACAGTTTTTCCTGGTAAATATGCACTGGAAATGTCT GCTGTGATTTATAAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAG AGAGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGATAGAGGAT TACCCCTATGCTGTTGATGGGCTAGAAGTTTGGTCTGCAATTGAAACTTGGGTCACTGAA TACTGCTCGTTCTACTACCCTACAGATGACTTGATTCAATGTGACACCGAACTGCAGTCA TGGTGGATGGAGCTCCGCAACAAGGGTCATGGTGACAAGAAAGATGAGCCATGGTGGTCA GAGATGCAGACACTAGTTGATCTTACCAAAACATGCACAATTATCATTTGGGTGGCTTCT GCCCTCCATGCAGCTGTCAATTTTGGGCAATACCCTTATGCTGGCTACCTTCCAAACCGC CCAACCATAAGCCGCCGCTTCATGCCTGAGCCAGGCACTCCAGAGTATCAAGAGCTTGAG AGAAACCCTGACTTAGCCTTCCTGAAAACAATTACAGCCCAGCTACAAACCCTTCTTGGT GTGTCCCTAATAGAGATTTTGTCTCGGCATTCTACTGATGAGATTTACCTTGGGCAGAGA GACACTCCTGAATGGACTTCAGATGCTGAGCCCCTGGCGGCATTTGAGAGATTTGGCAGC AGGCTGAGGGGCATTGAAACAAGAATTAACCAAATGAACCAAGACAGGAGATGGAATAAC CGATTTGGGCCTGTTGAGATGCAATACACCTTGCTCTATCCCAACACCTCAGATTACTCA AGACAGGGTGGCCTCGCTGGCAAGGGAATTCCTAATAGTGTCTCAATCTAAATTTTTTGT TGAAAT