Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_05s0020g00860.t01
CDS Infomation

cds chromosome:12X:5:2694321:2697484:1 gene:VIT_05s0020g00860 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA pseudouridine synthase [Source:UniProtKB/TrEMBL;Acc:D7T696]
Sequence

ATGAGTTACGGCGTGGTGGGAGGCCTCGCTGCTCCTCCTCTGAATAGTCTGAGTGATGGG
GGTGGTGGAAGTGGGGGTGGCGGCGGCGGCGGCGGCGATTCCATCCACTTGGGTAATACC
AGTGCGAGTGGTTATAAATGGCGTTTGGTTATAGCGTATGAAGGCACCCGTTATTCAGGT
TGGCAATATCAGCAGTCACCGCCAACCATACAGTGCATTGTGGAAAAAGCATTAACCAGA
GCGACAAAGCTAGAAAGGGAGGACCTGTACTTGGTAGGTGCAAGTAGAACAGATACAGGA
GTCCATGCCTGGGGTCAGGTGGCACACTTTCTTACTCCTTTCAACTATGATGGCTTGGAA
AGCATCCATGCAGCCCTAAATGGTCTTCTTCCTCCTGATATCCGAGTTAGAGAGATTAGC
CCAGCAGTACCTGAATTCCATGCCCGTTTTTCAGTGAAGAGCAAGATTTATCATTATAAG
ATATATAATGACGCTGTCATGGATCCTTTTCTGCGTCATTATGTGTATCATAGTGTATAT
AAACTCAATACTCTTGCCATGAGGGAGGCTGCAAAGCATTTCACTGGAAAGCATGATTTC
TCTGCTTTTGTCAATGCATCACATAATGATCGGTCACCAAACCCAGTTAAGAATATTTTC
CGGTTCGATGTCAATGAAATGGGTGCTCTTTTGCAGCTTGAAGTTGAAGGTTCGGGTTTT
TTGTATCGACAAGTGAGGAATATGGTTGCTCTGTTGCTTCAAATAGGAAGGGAAGCAATT
CCTCCTAATATTGTTCCCTGGATTTTAGCCACTCGAGATCGAAAGGAGCTTGCTAAATAC
GCATTGTCTGCACCACCCCATGGACTCTGCCTCATGAGTGTCAAGTATAATGAAGAGCAC
CTACAGCTTCCTTCAGGTTGTCCAGCCACTAGTCATGGCAGGCATCATACTGTACGCAAA
TGTAAGCTTCCATTCTATTGA

Peptide Sequence

PEP ID

VIT_05s0020g00860.t01
PEP Infomation

pep chromosome:12X:5:2694321:2697484:1 gene:VIT_05s0020g00860 transcript:VIT_05s0020g00860.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA pseudouridine synthase [Source:UniProtKB/TrEMBL;Acc:D7T696]
Sequence

MSYGVVGGLAAPPLNSLSDGGGGSGGGGGGGGDSIHLGNTSASGYKWRLVIAYEGTRYSG
WQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWGQVAHFLTPFNYDGLE
SIHAALNGLLPPDIRVREISPAVPEFHARFSVKSKIYHYKIYNDAVMDPFLRHYVYHSVY
KLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFDVNEMGALLQLEVEGSGF
LYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALSAPPHGLCLMSVKYNEEH
LQLPSGCPATSHGRHHTVRKCKLPFY

Transcript Sequence

Transcript ID

VIT_05s0020g00860.t01
Transcript Infomation

cdna chromosome:12X:5:2694321:2697484:1 gene:VIT_05s0020g00860 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA pseudouridine synthase [Source:UniProtKB/TrEMBL;Acc:D7T696]
Sequence

ATGAGTTACGGCGTGGTGGGAGGCCTCGCTGCTCCTCCTCTGAATAGTCTGAGTGATGGG
GGTGGTGGAAGTGGGGGTGGCGGCGGCGGCGGCGGCGATTCCATCCACTTGGGTAATACC
AGTGCGAGTGGTTATAAATGGCGTTTGGTTATAGCGTATGAAGGCACCCGTTATTCAGGT
TGGCAATATCAGCAGTCACCGCCAACCATACAGTGCATTGTGGAAAAAGCATTAACCAGA
GCGACAAAGCTAGAAAGGGAGGACCTGTACTTGGTAGGTGCAAGTAGAACAGATACAGGA
GTCCATGCCTGGGGTCAGGTGGCACACTTTCTTACTCCTTTCAACTATGATGGCTTGGAA
AGCATCCATGCAGCCCTAAATGGTCTTCTTCCTCCTGATATCCGAGTTAGAGAGATTAGC
CCAGCAGTACCTGAATTCCATGCCCGTTTTTCAGTGAAGAGCAAGATTTATCATTATAAG
ATATATAATGACGCTGTCATGGATCCTTTTCTGCGTCATTATGTGTATCATAGTGTATAT
AAACTCAATACTCTTGCCATGAGGGAGGCTGCAAAGCATTTCACTGGAAAGCATGATTTC
TCTGCTTTTGTCAATGCATCACATAATGATCGGTCACCAAACCCAGTTAAGAATATTTTC
CGGTTCGATGTCAATGAAATGGGTGCTCTTTTGCAGCTTGAAGTTGAAGGTTCGGGTTTT
TTGTATCGACAAGTGAGGAATATGGTTGCTCTGTTGCTTCAAATAGGAAGGGAAGCAATT
CCTCCTAATATTGTTCCCTGGATTTTAGCCACTCGAGATCGAAAGGAGCTTGCTAAATAC
GCATTGTCTGCACCACCCCATGGACTCTGCCTCATGAGTGTCAAGTATAATGAAGAGCAC
CTACAGCTTCCTTCAGGTTGTCCAGCCACTAGTCATGGCAGGCATCATACTGTACGCAAA
TGTAAGCTTCCATTCTATTGATAAATTTTGAATT