Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_04s0044g01460.t01
CDS Infomation

cds chromosome:12X:4:22979959:22981350:-1 gene:VIT_04s0044g01460 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6I0D6]
Sequence

ATGAACGAGGCTGAAATGGTGATACCCCACTTGTTCAGATGCCCGATTAGTCTAGACTTG
TTTACAGATCCAGTCACTCTATCCACAGGCCAAACGTACGATCGGTCCAGCATAGAACAA
TGGCTGGCTGCAGGCAACCTCACATGCCCTGTCACAATGCAGAAGCTCCATGATCCATCT
ATGGTTCCAAACCATACTCTTCGCCATTTGATAGATCAGTGGCTTCAAACAGGTCAACAA
GTGGATCCTGAGAGCTTGACGGTAATGGGTCCTGGCCCCTCATTGGCTGCAATGAAGTGC
AGCCTTCAATCTCAGGAATCCTCATTGGAGAACAAGCTTGAGACGCTCAAAGCAATTCGA
GTTTCGAGTGATGAATTGTCATCTAGGAATTCTTATATGATCCAATTGGGCTTCTTGCCA
TTGCTATTGGAACTTGTATTTGGACAGGTCGAAGCCGAGCAATATAGGGACAGTTTGAAG
CTTGTGGAGGAAGCACTTTCTTGTGCCTTGAAATTGCTGGCTTTCAGTGAATTGGGGTGC
CTAAACATGCTGAAAGAGGAGTCAAAATTAGAATCTTTGGTTGTTTTGTTCAAACACGGG
ACTCCCATGATAAAGACAAGTGTATGTAATCTTCTGGAGGCAATTTCATCTTCCTCAGAA
ACTAAAGAGCTCTGTGCTACGCTTGGAACGACCCACCAACTCTTACAGGGGATAGTCCTC
CTTGTTCACCATGACTGCGAGGCTTCTGAAGCCGGAATCAAAGCCATGTTGGCATTGTGC
TCCGTAGAATCAAATAAAGAAAATTTGATAAGGGAAGGGGCAGTAGATGGACTCATAAGC
TACATTTCCAATGCCCAAGTGAAAGAAAAAAGCGCAGCGCCATTGGCAATAGCAGTACTA
GAAGTGCTTTTAGGAGTAGAGAGTGGAAGAGAGGCGGTCCTTAACAATCCCAATGGTGTT
AAGGCCCTGGTTAAGATGACTTTCAAAGTATCAGATCACCAAGGCAGTGAGAACGCTGTT
AGCTCTCTTATGGTGCTATGCACTGATTCATTACGGGCAAGGGAAGAAGCCATTTCTGCA
GGAGTTTTGTCACAGTTGTTGTTTTTGCTTCAGAGCCAGTGCAGTGGGACGATCAAGACA
AAGGCAAGAATGCTGCTTAAGCTTCTTAGATCAAAGAGAATTATGGACCAAAACCATTGA

Peptide Sequence

PEP ID

VIT_04s0044g01460.t01
PEP Infomation

pep chromosome:12X:4:22979959:22981350:-1 gene:VIT_04s0044g01460 transcript:VIT_04s0044g01460.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6I0D6]
Sequence

MNEAEMVIPHLFRCPISLDLFTDPVTLSTGQTYDRSSIEQWLAAGNLTCPVTMQKLHDPS
MVPNHTLRHLIDQWLQTGQQVDPESLTVMGPGPSLAAMKCSLQSQESSLENKLETLKAIR
VSSDELSSRNSYMIQLGFLPLLLELVFGQVEAEQYRDSLKLVEEALSCALKLLAFSELGC
LNMLKEESKLESLVVLFKHGTPMIKTSVCNLLEAISSSSETKELCATLGTTHQLLQGIVL
LVHHDCEASEAGIKAMLALCSVESNKENLIREGAVDGLISYISNAQVKEKSAAPLAIAVL
EVLLGVESGREAVLNNPNGVKALVKMTFKVSDHQGSENAVSSLMVLCTDSLRAREEAISA
GVLSQLLFLLQSQCSGTIKTKARMLLKLLRSKRIMDQNH

Transcript Sequence

Transcript ID

VIT_04s0044g01460.t01
Transcript Infomation

cdna chromosome:12X:4:22979959:22981350:-1 gene:VIT_04s0044g01460 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6I0D6]
Sequence

TCTCCTCAATGAACGAGGCTGAAATGGTGATACCCCACTTGTTCAGATGCCCGATTAGTC
TAGACTTGTTTACAGATCCAGTCACTCTATCCACAGGCCAAACGTACGATCGGTCCAGCA
TAGAACAATGGCTGGCTGCAGGCAACCTCACATGCCCTGTCACAATGCAGAAGCTCCATG
ATCCATCTATGGTTCCAAACCATACTCTTCGCCATTTGATAGATCAGTGGCTTCAAACAG
GTCAACAAGTGGATCCTGAGAGCTTGACGGTAATGGGTCCTGGCCCCTCATTGGCTGCAA
TGAAGTGCAGCCTTCAATCTCAGGAATCCTCATTGGAGAACAAGCTTGAGACGCTCAAAG
CAATTCGAGTTTCGAGTGATGAATTGTCATCTAGGAATTCTTATATGATCCAATTGGGCT
TCTTGCCATTGCTATTGGAACTTGTATTTGGACAGGTCGAAGCCGAGCAATATAGGGACA
GTTTGAAGCTTGTGGAGGAAGCACTTTCTTGTGCCTTGAAATTGCTGGCTTTCAGTGAAT
TGGGGTGCCTAAACATGCTGAAAGAGGAGTCAAAATTAGAATCTTTGGTTGTTTTGTTCA
AACACGGGACTCCCATGATAAAGACAAGTGTATGTAATCTTCTGGAGGCAATTTCATCTT
CCTCAGAAACTAAAGAGCTCTGTGCTACGCTTGGAACGACCCACCAACTCTTACAGGGGA
TAGTCCTCCTTGTTCACCATGACTGCGAGGCTTCTGAAGCCGGAATCAAAGCCATGTTGG
CATTGTGCTCCGTAGAATCAAATAAAGAAAATTTGATAAGGGAAGGGGCAGTAGATGGAC
TCATAAGCTACATTTCCAATGCCCAAGTGAAAGAAAAAAGCGCAGCGCCATTGGCAATAG
CAGTACTAGAAGTGCTTTTAGGAGTAGAGAGTGGAAGAGAGGCGGTCCTTAACAATCCCA
ATGGTGTTAAGGCCCTGGTTAAGATGACTTTCAAAGTATCAGATCACCAAGGCAGTGAGA
ACGCTGTTAGCTCTCTTATGGTGCTATGCACTGATTCATTACGGGCAAGGGAAGAAGCCA
TTTCTGCAGGAGTTTTGTCACAGTTGTTGTTTTTGCTTCAGAGCCAGTGCAGTGGGACGA
TCAAGACAAAGGCAAGAATGCTGCTTAAGCTTCTTAGATCAAAGAGAATTATGGACCAAA
ACCATTGAACAATATGATTGATGATGCCTAAATGTTTCTTGTCTCTACTGTATGATGTCT
CTCTCTTTCTCTATCAGTTGTAAAGAAGCATCAATTTGTACTTACGGGTTCCATAATGCT
TTACTTTACACAAACTAATACTTTACCAAAAGAAGAGGACTGTCTATCATTTATAATTTC
ATGATGTGATCT