Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_04s0043g00840.t01
CDS Infomation

cds chromosome:12X:4:15210714:15212714:1 gene:VIT_04s0043g00840 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7TDU7]
Sequence

ATGGCCAAGTTTGGGGTCTTGGAAACTGATCCATCCATGGCAGCCAAGGCCACAGAGGAG
CTGAAGAAGGAGTTGCAGAGGCTGGTGAGCAGAATTGTTGATGAAGATGAGAGCTGTGCT
GACACCACTGATAAGGCTCTCAAAATTTTGTTTGCTTTGAGAGATTTCAAGTTCAAGGGG
TCCCTTGATTTTGGGGTTGAAACGGAGAATCCGGCTCTGCCTCAGGAGTTCAGGTGCCCT
ATTTCCAAACAGCTCATGAGAGACCCTGTTGTGGTGGCCACTGGCCAGACATATGACAGG
CCCTTCATTCAAAAATGGCTGAAAGACGGGCATAGGACTTGCCCCCGGACCCAACAAGTC
CTCTCCCATACCATCCTCACCCCAAATAATTTGGTTCGAGAAATGATTTCAGAATGGTGC
AAAGAACATGGGATTGAGCTTCCGAAGCCAGTTGAGGATGTCGATGAGGAAGTGATCACA
GATGCAGACAGGGGGCACTTGAATTCGTTGCTTGAGAGGATGTCCTCTTCTGCTTCTGAT
CAGAAAGAGGCTGCAAGAGAGCTTAGGCTGCTCACAAAGAGGATGCCGTCATTTAGGGCC
CTTTTCGGTGAATGCACTGATGCAGTTCCTCAGCTGCTCAGCCCGCTCTCACCAGATGCA
GTGGATGTTGATCCTGAACTCCAAGAGGATTTGATCACCACAGTTTTAAATCTCTCGATA
CATGACAACAACAAGAAGCTAGTTGCAGAGGATCCAATGGCAATCCCCGTGCTCATTGAG
TCCTTGAAGAGTGGAACCATTGAGACTAGGACCAACGCTGCTGCAGCCCTTTTCACATTA
TCAGCCCTTGATTCGAACAAGCTCATTATTGGGAAGTCAGGTGCTCTGAAACCTCTATTA
GACTTATTGGAAGAAGGGCATCCATTAGCCATGAAAGATGTTGCCTCGGCCATATTTAAT
CTATGCATTGTCCTTGAGAACAAAGGGAGGGCTGTCCATGATGGGGCAGTCACAGTGATT
CTGAAGAAGATCATGGATGGTATACTTGTTGACGAGCTATTGGCTATTCTCGCAATGTTG
TCCAGTCATCAAAGGGCTGTTGAGGAGATGGGGGAGCTCGGAGCAGTTCCTTGCTTGCTT
AGAATCATAAGGGAGAGCAAATGTGAGCGCAACAAGGAGAATTGTATTGCCATCCTGCAC
ACGGTTTGTTTCAATGATCGAGCTAAATTGAGGGCAATCAGAGAAGAGGAAAATGACTAT
GGTACAATCTCGAGGCTGGCGCAGACTGGCACTTCGAGGGCTAAGAGGAAGGCCAACGGC
ATCCTTGAGAGGCTGAATAGAGTTGCTTTAATCACGCACACTGCATGA

Peptide Sequence

PEP ID

VIT_04s0043g00840.t01
PEP Infomation

pep chromosome:12X:4:15210714:15212714:1 gene:VIT_04s0043g00840 transcript:VIT_04s0043g00840.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7TDU7]
Sequence

MAKFGVLETDPSMAAKATEELKKELQRLVSRIVDEDESCADTTDKALKILFALRDFKFKG
SLDFGVETENPALPQEFRCPISKQLMRDPVVVATGQTYDRPFIQKWLKDGHRTCPRTQQV
LSHTILTPNNLVREMISEWCKEHGIELPKPVEDVDEEVITDADRGHLNSLLERMSSSASD
QKEAARELRLLTKRMPSFRALFGECTDAVPQLLSPLSPDAVDVDPELQEDLITTVLNLSI
HDNNKKLVAEDPMAIPVLIESLKSGTIETRTNAAAALFTLSALDSNKLIIGKSGALKPLL
DLLEEGHPLAMKDVASAIFNLCIVLENKGRAVHDGAVTVILKKIMDGILVDELLAILAML
SSHQRAVEEMGELGAVPCLLRIIRESKCERNKENCIAILHTVCFNDRAKLRAIREEENDY
GTISRLAQTGTSRAKRKANGILERLNRVALITHTA

Transcript Sequence

Transcript ID

VIT_04s0043g00840.t01
Transcript Infomation

cdna chromosome:12X:4:15210714:15212714:1 gene:VIT_04s0043g00840 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7TDU7]
Sequence

AATTTTCATGTTTCATCTTCATGGCCAAGTTTGGGGTCTTGGAAACTGATCCATCCATGG
CAGCCAAGGCCACAGAGGAGCTGAAGAAGGAGTTGCAGAGGCTGGTGAGCAGAATTGTTG
ATGAAGATGAGAGCTGTGCTGACACCACTGATAAGGCTCTCAAAATTTTGTTTGCTTTGA
GAGATTTCAAGTTCAAGGGGTCCCTTGATTTTGGGGTTGAAACGGAGAATCCGGCTCTGC
CTCAGGAGTTCAGGTGCCCTATTTCCAAACAGCTCATGAGAGACCCTGTTGTGGTGGCCA
CTGGCCAGACATATGACAGGCCCTTCATTCAAAAATGGCTGAAAGACGGGCATAGGACTT
GCCCCCGGACCCAACAAGTCCTCTCCCATACCATCCTCACCCCAAATAATTTGGTTCGAG
AAATGATTTCAGAATGGTGCAAAGAACATGGGATTGAGCTTCCGAAGCCAGTTGAGGATG
TCGATGAGGAAGTGATCACAGATGCAGACAGGGGGCACTTGAATTCGTTGCTTGAGAGGA
TGTCCTCTTCTGCTTCTGATCAGAAAGAGGCTGCAAGAGAGCTTAGGCTGCTCACAAAGA
GGATGCCGTCATTTAGGGCCCTTTTCGGTGAATGCACTGATGCAGTTCCTCAGCTGCTCA
GCCCGCTCTCACCAGATGCAGTGGATGTTGATCCTGAACTCCAAGAGGATTTGATCACCA
CAGTTTTAAATCTCTCGATACATGACAACAACAAGAAGCTAGTTGCAGAGGATCCAATGG
CAATCCCCGTGCTCATTGAGTCCTTGAAGAGTGGAACCATTGAGACTAGGACCAACGCTG
CTGCAGCCCTTTTCACATTATCAGCCCTTGATTCGAACAAGCTCATTATTGGGAAGTCAG
GTGCTCTGAAACCTCTATTAGACTTATTGGAAGAAGGGCATCCATTAGCCATGAAAGATG
TTGCCTCGGCCATATTTAATCTATGCATTGTCCTTGAGAACAAAGGGAGGGCTGTCCATG
ATGGGGCAGTCACAGTGATTCTGAAGAAGATCATGGATGGTATACTTGTTGACGAGCTAT
TGGCTATTCTCGCAATGTTGTCCAGTCATCAAAGGGCTGTTGAGGAGATGGGGGAGCTCG
GAGCAGTTCCTTGCTTGCTTAGAATCATAAGGGAGAGCAAATGTGAGCGCAACAAGGAGA
ATTGTATTGCCATCCTGCACACGGTTTGTTTCAATGATCGAGCTAAATTGAGGGCAATCA
GAGAAGAGGAAAATGACTATGGTACAATCTCGAGGCTGGCGCAGACTGGCACTTCGAGGG
CTAAGAGGAAGGCCAACGGCATCCTTGAGAGGCTGAATAGAGTTGCTTTAATCACGCACA
CTGCATGATGAAATGAACGAACACCCCAATCCCTATTGTCAATACTCTCACTTCATCCAT
CACTT