Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_04s0008g00840.t01
CDS Infomation

cds chromosome:12X:4:716537:725063:-1 gene:VIT_04s0008g00840 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B [Source:UniProtKB/TrEMBL;Acc:F6H394]
Sequence

ATGAACGGCATCGGCGGAGAGGAGGTCACGGCTCGGGCGGAGCCGGCTCGGCCGCTGGAG
TGGAAATTTGCGCAGGTGTTTGGGGAGCGGGCGTTTGGGGAGGAAGTTCAGGAAGTTGAT
ATCATATCAGCTATTGAGTTTGATAAAACTGGGGACCATCTTGCTACTGGAGATCGTGGG
GGTCGGGTGGTTTTATTTAACAGAACTGATACGAGGGATCATGGTGGGAATCGAAGAGAT
TTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTT
CAGAGCCATGAACCAGAGTTTGACTATCTCAAGAGCTTGGAAATTGAGGAGAAAATCAAC
AAGATTAGATGGTGTCAGACAGCTAACAGCGCACTGTTTCTTCTCTCCACTAATGATAAA
ACCATCAAATTCTGGAAGGTCCAAGAGAAGAAGGTCAAGAAAGTATGTGACATGAATGTT
GACCCTTCAAAAGCTTTGGGAAATGGTATTGTTTGTTCAAGTATATCAACAAGCTCCAAA
CCATGTATTGCAAATGGAGGATGTGTCAACAGAACCTTCAATTATTTGAGCACTGACTTT
TCATTTCCACCTGGGGGAATACCATTCCTACATTTGCCCAGGGTGATGAGTCATGAGACA
AGCTCAGTGGCCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCC
ATTTCAAATAACAGTGATGGTGAAACTTTTATATCAGCTGATGATCTCCGGATAAATCTC
TGGAACTTGGAAATTAGCAGTCAAAGTTTCAACATTGTTGATGTGAAGCCTGCAAACATG
GAGGATCTAACTGAGGTTATAACTTCAGCAGAATTTCATCCTTCCCACTGCAATATGTTA
GCATATAGTAGCTCAAAAGGCTCAATCCGTCTTATTGATTTGCGGCAATCAGCTTTATGT
GATACACATTGCAAATTGTTTGAGGAACTGGAGGCATCTACTTCAAGATCTTTTTTTACA
GAGATAATTGCCTCAATTTCTGATATAAAGTTTTCAAAGGATGGAAGACATTTACTTAGT
CGTGATTATATGACACTTAAGTTGTGGGACATAAATATGGAGTCTGTGCCAGTCGCAACT
TTCCAAGTTCATGAGCATTTAAGACCTAAGCTGTGTGATTTATATGAAAATGATTCTATC
TTCGACAAATTTGAGTGTTGTCTGAGTGGAGATGGACTACGAGTGGCGACTGGTTCCTAC
AGTAATCTATTTCGTGTATTTGGTTGTTCTGAAGGCAGCACAGAAGCCACAACTTTGGAA
GCCAATAAAAATCCCATGATGAGGCAAGTCCAGACCCCCTCAAGGCCTTCTAGATCCCTG
GGCTCTCTATCTCGTGTTGGCAGGCGAGGAACAGATAGTTCTGGAGCTGACACAAATGGA
AACGCTTTTGATTTCATGACAAAGTTGCTCCATTTAGCCTGGCATCCAACTGAAAACTCC
CTAGCTTGCGCCACTTCAAACAGCCTGTACATGTACTATGCATAA

Peptide Sequence

PEP ID

VIT_04s0008g00840.t01
PEP Infomation

pep chromosome:12X:4:716537:725063:-1 gene:VIT_04s0008g00840 transcript:VIT_04s0008g00840.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B [Source:UniProtKB/TrEMBL;Acc:F6H394]
Sequence

MNGIGGEEVTARAEPARPLEWKFAQVFGERAFGEEVQEVDIISAIEFDKTGDHLATGDRG
GRVVLFNRTDTRDHGGNRRDLEMADYSPSRHPEFHYKTEFQSHEPEFDYLKSLEIEEKIN
KIRWCQTANSALFLLSTNDKTIKFWKVQEKKVKKVCDMNVDPSKALGNGIVCSSISTSSK
PCIANGGCVNRTFNYLSTDFSFPPGGIPFLHLPRVMSHETSSVARCRRIYAHAHDYHINS
ISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPSHCNML
AYSSSKGSIRLIDLRQSALCDTHCKLFEELEASTSRSFFTEIIASISDIKFSKDGRHLLS
RDYMTLKLWDINMESVPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY
SNLFRVFGCSEGSTEATTLEANKNPMMRQVQTPSRPSRSLGSLSRVGRRGTDSSGADTNG
NAFDFMTKLLHLAWHPTENSLACATSNSLYMYYA

Transcript Sequence

Transcript ID

VIT_04s0008g00840.t01
Transcript Infomation

cdna chromosome:12X:4:716537:725063:-1 gene:VIT_04s0008g00840 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B [Source:UniProtKB/TrEMBL;Acc:F6H394]
Sequence

GAGAAACTGCGAGAAAATAGAGAGAAGGTGAGAGAAAGAGAGTGTGCTTGGGTGGAATAT
CTTTGATGTATGACTGTATGAGCACGTACGCGTAGGTTGCGATGGATGATGATGATGAAT
CGAGAAGCTTGCATTTTCCATGAAGGCTGTTGCTAATAAGCGATTTAGGTCATTGGATCG
GTCTTTGACCCATTGAATACGTGTTACTTGGTTATGAATTTGATCGGATAATGAACGGCA
TCGGCGGAGAGGAGGTCACGGCTCGGGCGGAGCCGGCTCGGCCGCTGGAGTGGAAATTTG
CGCAGGTGTTTGGGGAGCGGGCGTTTGGGGAGGAAGTTCAGGAAGTTGATATCATATCAG
CTATTGAGTTTGATAAAACTGGGGACCATCTTGCTACTGGAGATCGTGGGGGTCGGGTGG
TTTTATTTAACAGAACTGATACGAGGGATCATGGTGGGAATCGAAGAGATTTAGAGATGG
CGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATG
AACCAGAGTTTGACTATCTCAAGAGCTTGGAAATTGAGGAGAAAATCAACAAGATTAGAT
GGTGTCAGACAGCTAACAGCGCACTGTTTCTTCTCTCCACTAATGATAAAACCATCAAAT
TCTGGAAGGTCCAAGAGAAGAAGGTCAAGAAAGTATGTGACATGAATGTTGACCCTTCAA
AAGCTTTGGGAAATGGTATTGTTTGTTCAAGTATATCAACAAGCTCCAAACCATGTATTG
CAAATGGAGGATGTGTCAACAGAACCTTCAATTATTTGAGCACTGACTTTTCATTTCCAC
CTGGGGGAATACCATTCCTACATTTGCCCAGGGTGATGAGTCATGAGACAAGCTCAGTGG
CCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCCATTTCAAATA
ACAGTGATGGTGAAACTTTTATATCAGCTGATGATCTCCGGATAAATCTCTGGAACTTGG
AAATTAGCAGTCAAAGTTTCAACATTGTTGATGTGAAGCCTGCAAACATGGAGGATCTAA
CTGAGGTTATAACTTCAGCAGAATTTCATCCTTCCCACTGCAATATGTTAGCATATAGTA
GCTCAAAAGGCTCAATCCGTCTTATTGATTTGCGGCAATCAGCTTTATGTGATACACATT
GCAAATTGTTTGAGGAACTGGAGGCATCTACTTCAAGATCTTTTTTTACAGAGATAATTG
CCTCAATTTCTGATATAAAGTTTTCAAAGGATGGAAGACATTTACTTAGTCGTGATTATA
TGACACTTAAGTTGTGGGACATAAATATGGAGTCTGTGCCAGTCGCAACTTTCCAAGTTC
ATGAGCATTTAAGACCTAAGCTGTGTGATTTATATGAAAATGATTCTATCTTCGACAAAT
TTGAGTGTTGTCTGAGTGGAGATGGACTACGAGTGGCGACTGGTTCCTACAGTAATCTAT
TTCGTGTATTTGGTTGTTCTGAAGGCAGCACAGAAGCCACAACTTTGGAAGCCAATAAAA
ATCCCATGATGAGGCAAGTCCAGACCCCCTCAAGGCCTTCTAGATCCCTGGGCTCTCTAT
CTCGTGTTGGCAGGCGAGGAACAGATAGTTCTGGAGCTGACACAAATGGAAACGCTTTTG
ATTTCATGACAAAGTTGCTCCATTTAGCCTGGCATCCAACTGAAAACTCCCTAGCTTGCG
CCACTTCAAACAGCCTGTACATGTACTATGCATAAAGATGGTCTTGGAAAGATTTATGTA
ATTTTGCGCGGCAAAGGCTGCTTTGCCTTCTTCACCAACCAGTGACGTGGAAGCTGCCTC
ATCATCCAGGATCTGGACAATCCACTGGAAGCCTAGCATGTCCTCCAAGAATTGAACTTG
GCTTTTGCTCAAAGGGTGGCAACACATTTAGTGGGATCGTGCTCTCTCATGAGAGAAGAT
TCATGCAGTTCTGTCCTCATAGTGTTCTGTTTAGGTCAAGAAATTGTGATTGATAGTATC
CATTCTTCCTGCAACTGAAAAAAAGCTTGAGCTCGAGGTCAATGGAAATCTGAATCCAGG
GGAAGGAGCTAGTGTGGTGCATCAATTCAATTGCACCTGTGGCTTGCAATTTGTATTATT
TGAATCCAACATTCTGATGGCTTGTATTAAATTTTATCATGTTCATTATAATCTTCCATC
CCAA