Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_03s0088g00650.t01
CDS Infomation

cds chromosome:12X:3:8842942:8844322:1 gene:VIT_03s0088g00650 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6HBP1]
Sequence

ATGAACGATTATCACAAACTTGTCTTCTTTATTGGGGTTTTAACCTTGATCAGTTTGGTT
CAAGTTTCAGATGCTTCTGTTGTTTCAACAGGAGACTTCAACAAGGATTTCTTTGTCATT
TGGTCTCCTAGCCATGTCAATACTTCTGCAGATGGCCATGCAAGAAGCTTGAAGCTTGAT
AAGGAATCAGGTGCTGGTTTTGCTTCAAACCAGTTATTCCTGTTTGGGCAGATTGACATG
CAAATCAAACTAGTAACAGGCCATTCTGCAGGCACAGTTGTGGCCTATTATCTAACTTCT
GATCAACCTAATCGCGACGAGGTCGACTTTGAGTTCCTGGGAAATGTGAGTGGGCAGCCA
TATATCCTTCAAACCAATGTTTTTGCAGACGGGTTTGACAACAGGGAAGAGAGGATTTAT
CTATGGTTTGATCCAACAGAGGACTTCCACACCTATTCCATACTGTGGAACCTTCACCAG
ATTGTATTCATGGTGGACTGGGTGCCCATAAGAGTGTACAGAAACCATGCAGACAAGGGG
GTGGCCTTTCCCAGATGGCAGCCAATGAGCATCAAAATCAGCCTATGGAACGGCGACAGC
TGGGCGACCCGAGGTGGAAAGGACAAGATTGACTGGACAAAGGGCCCATTCATAGCCTCA
TTCAGGAACTACAAGCTTGATGCCTGCATTTGGAGGGGCAATGCAAGGTTTTGCAGGGCA
GATAGCCCTACAAATTGGTGGAACAAAGAAAGGTTCAGCTCTCTAACATCAACCCAGAGA
AGGCTTTTCAAATGGGTTAGGACACATCATCTCATTTATGACTATTGCCAAGATAACGAG
AGATTCCAAAACAACCTTCCAAAGGAATGCTTTCTTCCCAAGTACTGA

Peptide Sequence

PEP ID

VIT_03s0088g00650.t01
PEP Infomation

pep chromosome:12X:3:8842942:8844322:1 gene:VIT_03s0088g00650 transcript:VIT_03s0088g00650.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6HBP1]
Sequence

MNDYHKLVFFIGVLTLISLVQVSDASVVSTGDFNKDFFVIWSPSHVNTSADGHARSLKLD
KESGAGFASNQLFLFGQIDMQIKLVTGHSAGTVVAYYLTSDQPNRDEVDFEFLGNVSGQP
YILQTNVFADGFDNREERIYLWFDPTEDFHTYSILWNLHQIVFMVDWVPIRVYRNHADKG
VAFPRWQPMSIKISLWNGDSWATRGGKDKIDWTKGPFIASFRNYKLDACIWRGNARFCRA
DSPTNWWNKERFSSLTSTQRRLFKWVRTHHLIYDYCQDNERFQNNLPKECFLPKY

Transcript Sequence

Transcript ID

VIT_03s0088g00650.t01
Transcript Infomation

cdna chromosome:12X:3:8842942:8844322:1 gene:VIT_03s0088g00650 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6HBP1]
Sequence

CCAACTCCGACAGAAAACCATGAACGATTATCACAAACTTGTCTTCTTTATTGGGGTTTT
AACCTTGATCAGTTTGGTTCAAGTTTCAGATGCTTCTGTTGTTTCAACAGGAGACTTCAA
CAAGGATTTCTTTGTCATTTGGTCTCCTAGCCATGTCAATACTTCTGCAGATGGCCATGC
AAGAAGCTTGAAGCTTGATAAGGAATCAGGTGCTGGTTTTGCTTCAAACCAGTTATTCCT
GTTTGGGCAGATTGACATGCAAATCAAACTAGTAACAGGCCATTCTGCAGGCACAGTTGT
GGCCTATTATCTAACTTCTGATCAACCTAATCGCGACGAGGTCGACTTTGAGTTCCTGGG
AAATGTGAGTGGGCAGCCATATATCCTTCAAACCAATGTTTTTGCAGACGGGTTTGACAA
CAGGGAAGAGAGGATTTATCTATGGTTTGATCCAACAGAGGACTTCCACACCTATTCCAT
ACTGTGGAACCTTCACCAGATTGTATTCATGGTGGACTGGGTGCCCATAAGAGTGTACAG
AAACCATGCAGACAAGGGGGTGGCCTTTCCCAGATGGCAGCCAATGAGCATCAAAATCAG
CCTATGGAACGGCGACAGCTGGGCGACCCGAGGTGGAAAGGACAAGATTGACTGGACAAA
GGGCCCATTCATAGCCTCATTCAGGAACTACAAGCTTGATGCCTGCATTTGGAGGGGCAA
TGCAAGGTTTTGCAGGGCAGATAGCCCTACAAATTGGTGGAACAAAGAAAGGTTCAGCTC
TCTAACATCAACCCAGAGAAGGCTTTTCAAATGGGTTAGGACACATCATCTCATTTATGA
CTATTGCCAAGATAACGAGAGATTCCAAAACAACCTTCCAAAGGAATGCTTTCTTCCCAA
GTACTGATGGCAAAGGAAGATTTTCGATTTCCATTGTTTTTAAATTGTTTAATTTCTTCT
TTTTTTTTTTTTTTTTGTTGATTAATTTAGTGATAATTTGCTAAAGATCTTAAAGCCAAG
TTGGGGAAAATATCTTTTATGAATCATACATGCTTGGAAGTCAAGTAATTTGGGATTTGG
TAATA