Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_03s0063g00180.t01
CDS Infomation

cds chromosome:12X:3:3794347:3795836:-1 gene:VIT_03s0063g00180 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HQ94]
Sequence

ATGCCTGGGAGTTTAGAGCCATTGGATGTGGGTGTTCAGATCCCATACCACTTCAGGTGT
CCGATCTCGCTCGAGCTCATGTGTGACCCTGTCACCGTTAGCACGGGTCAGACCTACGAC
CGAGCCAGCATCGAGTACTGGGTCGGCACCGGCAACACCACCTGCCCCGTCACGCGGTCT
TCTCTTACCGACTTCACCCTCATCCCCAACCACACCCTTCGCCGTCTCATCCAGGACTGG
TGCGTTGCCAACCGGTCCTTTGGAGTTGAGCGTATTCCCACTCCCAAACAGCCTGCCGAC
CCAGCCTCGGTTCGGTCTCTGCAGACTCAGGTCTCTTCTCAGTCCAATCCTTCCCACACC
AGGCTTTCGGCGGTGAAGCGACTCAGAGGACTCGCTCGTGACTCGGACAAAAACCGCTCT
ATCATTGGTTCGCATAATGTTCAGGAGGTTCTTCTCCCCGTTATTTTTTCGGATTCGGAG
TGTGACTCGGCTGAGTTGAAGCATGAGTCACTCGCGCTTTTGGTGATGTTTCCTCTCTCT
GAGTCGGAGTGCGCGTTCGTAGCGTCCCAGCCGGACCGAGTCGCGCATCTCGTGTCGCTC
CTATTTCACGCATCGATCGAGGTTCGGGTCAACTCGGCCGCACTCATCGAGATCGTGGTC
GCCGGAACCAGATCACTGGATCTCAGAGCTCAAATCAGCAATGTGGATGAAATCTTCGAA
GGAATAACCGGAATTCTCAACTATCCATTGGCCTATCCTCGCGCGCTCAAAGTTGGAATC
AAAGCCTTATTCGCCCTATGCCTGGCCAAGCAAAGCCGCCACAAGGCGGTCGCTGCCGGT
GCTGTGACTGCTCTCATCGACCGATTGGCCGATTTTGAGAAGTGCGACGTGGAGCGAGCC
CTGGCAACAGTGGAGCTGCTCTGCCGCGTTCCGGCGGGTTGCGCCGCCTTCGCAGCACAC
GCACTCACCGTGCCCCTCCTCGTGAGAAAAATTCTAAAAGTCTCCGACCGCGCAACGGAG
TACGCTGCCGGAGCGCTGCTGTCGCTGTGCTCGGCGGCGGAGCAGAGCCAGAGAGAGGCG
GTCTCCGCGGGGGTAGTGACTCAGCTTTTGCTGCTGGTACAAAGCGACTGTACGGAAAGA
GCAAAGCGCAAAGCACAACTTTTGTTGAAGCTTCTTCGGGATTCGTGGCCAGAAGATTCG
GTAGTCAATTCTGACGATTTTGGTTGCAGTGATGTTGTTCCATTTTGA

Peptide Sequence

PEP ID

VIT_03s0063g00180.t01
PEP Infomation

pep chromosome:12X:3:3794347:3795836:-1 gene:VIT_03s0063g00180 transcript:VIT_03s0063g00180.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HQ94]
Sequence

MPGSLEPLDVGVQIPYHFRCPISLELMCDPVTVSTGQTYDRASIEYWVGTGNTTCPVTRS
SLTDFTLIPNHTLRRLIQDWCVANRSFGVERIPTPKQPADPASVRSLQTQVSSQSNPSHT
RLSAVKRLRGLARDSDKNRSIIGSHNVQEVLLPVIFSDSECDSAELKHESLALLVMFPLS
ESECAFVASQPDRVAHLVSLLFHASIEVRVNSAALIEIVVAGTRSLDLRAQISNVDEIFE
GITGILNYPLAYPRALKVGIKALFALCLAKQSRHKAVAAGAVTALIDRLADFEKCDVERA
LATVELLCRVPAGCAAFAAHALTVPLLVRKILKVSDRATEYAAGALLSLCSAAEQSQREA
VSAGVVTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPEDSVVNSDDFGCSDVVPF

Transcript Sequence

Transcript ID

VIT_03s0063g00180.t01
Transcript Infomation

cdna chromosome:12X:3:3794347:3795836:-1 gene:VIT_03s0063g00180 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HQ94]
Sequence

TCAGATATAGTATTGCTCGTCCTATTATAGAGAGAAAGAAAAAAATGCCTGGGAGTTTAG
AGCCATTGGATGTGGGTGTTCAGATCCCATACCACTTCAGGTGTCCGATCTCGCTCGAGC
TCATGTGTGACCCTGTCACCGTTAGCACGGGTCAGACCTACGACCGAGCCAGCATCGAGT
ACTGGGTCGGCACCGGCAACACCACCTGCCCCGTCACGCGGTCTTCTCTTACCGACTTCA
CCCTCATCCCCAACCACACCCTTCGCCGTCTCATCCAGGACTGGTGCGTTGCCAACCGGT
CCTTTGGAGTTGAGCGTATTCCCACTCCCAAACAGCCTGCCGACCCAGCCTCGGTTCGGT
CTCTGCAGACTCAGGTCTCTTCTCAGTCCAATCCTTCCCACACCAGGCTTTCGGCGGTGA
AGCGACTCAGAGGACTCGCTCGTGACTCGGACAAAAACCGCTCTATCATTGGTTCGCATA
ATGTTCAGGAGGTTCTTCTCCCCGTTATTTTTTCGGATTCGGAGTGTGACTCGGCTGAGT
TGAAGCATGAGTCACTCGCGCTTTTGGTGATGTTTCCTCTCTCTGAGTCGGAGTGCGCGT
TCGTAGCGTCCCAGCCGGACCGAGTCGCGCATCTCGTGTCGCTCCTATTTCACGCATCGA
TCGAGGTTCGGGTCAACTCGGCCGCACTCATCGAGATCGTGGTCGCCGGAACCAGATCAC
TGGATCTCAGAGCTCAAATCAGCAATGTGGATGAAATCTTCGAAGGAATAACCGGAATTC
TCAACTATCCATTGGCCTATCCTCGCGCGCTCAAAGTTGGAATCAAAGCCTTATTCGCCC
TATGCCTGGCCAAGCAAAGCCGCCACAAGGCGGTCGCTGCCGGTGCTGTGACTGCTCTCA
TCGACCGATTGGCCGATTTTGAGAAGTGCGACGTGGAGCGAGCCCTGGCAACAGTGGAGC
TGCTCTGCCGCGTTCCGGCGGGTTGCGCCGCCTTCGCAGCACACGCACTCACCGTGCCCC
TCCTCGTGAGAAAAATTCTAAAAGTCTCCGACCGCGCAACGGAGTACGCTGCCGGAGCGC
TGCTGTCGCTGTGCTCGGCGGCGGAGCAGAGCCAGAGAGAGGCGGTCTCCGCGGGGGTAG
TGACTCAGCTTTTGCTGCTGGTACAAAGCGACTGTACGGAAAGAGCAAAGCGCAAAGCAC
AACTTTTGTTGAAGCTTCTTCGGGATTCGTGGCCAGAAGATTCGGTAGTCAATTCTGACG
ATTTTGGTTGCAGTGATGTTGTTCCATTTTGACGACGATGACCACGATCACACACATTCC
ATTCTTCTTCTTCCCCAATTCAAATCTCTATTCCATTTCACGAATTGCAGAGGGGAAAAA
AAAAATGCAGCAAAATTGATTGTAGATCGGTATATAGGGAAATGTATTTGTGTATGTATG
TATTTTTGTACGTAAGAATTTTTGTTGAAAGGCAAAGGAAAAGATAGATG