Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_02s0025g04130.t01
CDS Infomation

cds chromosome:12X:2:3652019:3655701:-1 gene:VIT_02s0025g04130 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:D7TW49]
Sequence

ATGGCGAATGAAGATCTGGAGAGGGGAGGTGGAATGAAGAACAGGGGCAACAACGGCCAC
CCGCCGGGCTACTACTCCTCTACGTACTATGCGGAGGCTTCCGAGACTCACTGGACTTCG
TGGTTGATTCCCATGTTTGTTGTAGCGAATGTCGCTGTTTTTGTGGTGGTCATGTATGTC
AATGACTGCCCTAAGAAGAATACCGGGATCGAGGGGGCTTGTGTTGCTAAGTTTCTTCGG
AGGCTCTCGTTTCAGCCTCTCAGGGAGAACCCTCTCTTTGGCCCCTCGTCTTCTACATTG
GAAAAACTGGGAGGTCTTGAGTGGAACAAGGTAGTTTATGGGGATCAAGGATGGAGACTG
GTCACTTGTATCTGGTTACATGCAGGTGTTATACATCTGCTCGCAAACATGTTGAGCTTA
GTCTTTATTGGGATTCGCCTCGAGCAACAATTTGGATTTGTGCGTATTGGAATAATCTAC
TTGGTGTCTGGATTTGGTGGGAGCATTCTCTCTTCCCTTTTCATTCAACACAATATCTCT
GTGGGTGCGTCTGGTGCTCTGTTTGGACTTCTTGGAGCAATGCTTTCAGAGCTTATTACC
AACTGGAGTATTTATACCAACAAGGCTGCAGCTCTGTTCACACTTGTCGTGATCATTGCC
ATTAATTTAGCAGTTGGAATTCTTCCTCATGTTGACAATTTTGCCCACATTGGAGGATTC
TTGACGGGATTCCTCCTTGGCTTCATGTTGTTGCTCCGACCCCAGTTTGGGTGGGTGAAG
CGCCAGCATCGTCCAGCTGATGCCCGTGTCAAATCCAAGCACAAGGTTTATCAATACGCG
TTCTGGTTGGTTGCGATGGCTTTACTGATTGTCGGATTTACTGTTGGGTTGGTGATGCTG
TTCAGAGGAGAGAATGGAAATGATCATTGTAGCTGGTGTCATTACTTAAGCTGTGTGCCT
ACCTCTAAATGGAAATGTGACAACTGA

Peptide Sequence

PEP ID

VIT_02s0025g04130.t01
PEP Infomation

pep chromosome:12X:2:3652019:3655701:-1 gene:VIT_02s0025g04130 transcript:VIT_02s0025g04130.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:D7TW49]
Sequence

MANEDLERGGGMKNRGNNGHPPGYYSSTYYAEASETHWTSWLIPMFVVANVAVFVVVMYV
NDCPKKNTGIEGACVAKFLRRLSFQPLRENPLFGPSSSTLEKLGGLEWNKVVYGDQGWRL
VTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRIGIIYLVSGFGGSILSSLFIQHNIS
VGASGALFGLLGAMLSELITNWSIYTNKAAALFTLVVIIAINLAVGILPHVDNFAHIGGF
LTGFLLGFMLLLRPQFGWVKRQHRPADARVKSKHKVYQYAFWLVAMALLIVGFTVGLVML
FRGENGNDHCSWCHYLSCVPTSKWKCDN

Transcript Sequence

Transcript ID

VIT_02s0025g04130.t01
Transcript Infomation

cdna chromosome:12X:2:3652019:3655701:-1 gene:VIT_02s0025g04130 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:D7TW49]
Sequence

CCCCACAAATTTTCTCTCTATTTCGTCTGAAACTTCCATTCATTGAAGCCTTCACCGATT
CACTTCCAAGCTACTTCTTAATTCACAATCCTTTTTCTCTATTTAAATACATTATCTCTG
GTAGATTTAAGCTCAATACAGCGATTGCGGAGCCAGTTTTTTTTAGAGAGAAAAAGAGGG
GAAAAATGGCGAATGAAGATCTGGAGAGGGGAGGTGGAATGAAGAACAGGGGCAACAACG
GCCACCCGCCGGGCTACTACTCCTCTACGTACTATGCGGAGGCTTCCGAGACTCACTGGA
CTTCGTGGTTGATTCCCATGTTTGTTGTAGCGAATGTCGCTGTTTTTGTGGTGGTCATGT
ATGTCAATGACTGCCCTAAGAAGAATACCGGGATCGAGGGGGCTTGTGTTGCTAAGTTTC
TTCGGAGGCTCTCGTTTCAGCCTCTCAGGGAGAACCCTCTCTTTGGCCCCTCGTCTTCTA
CATTGGAAAAACTGGGAGGTCTTGAGTGGAACAAGGTAGTTTATGGGGATCAAGGATGGA
GACTGGTCACTTGTATCTGGTTACATGCAGGTGTTATACATCTGCTCGCAAACATGTTGA
GCTTAGTCTTTATTGGGATTCGCCTCGAGCAACAATTTGGATTTGTGCGTATTGGAATAA
TCTACTTGGTGTCTGGATTTGGTGGGAGCATTCTCTCTTCCCTTTTCATTCAACACAATA
TCTCTGTGGGTGCGTCTGGTGCTCTGTTTGGACTTCTTGGAGCAATGCTTTCAGAGCTTA
TTACCAACTGGAGTATTTATACCAACAAGGCTGCAGCTCTGTTCACACTTGTCGTGATCA
TTGCCATTAATTTAGCAGTTGGAATTCTTCCTCATGTTGACAATTTTGCCCACATTGGAG
GATTCTTGACGGGATTCCTCCTTGGCTTCATGTTGTTGCTCCGACCCCAGTTTGGGTGGG
TGAAGCGCCAGCATCGTCCAGCTGATGCCCGTGTCAAATCCAAGCACAAGGTTTATCAAT
ACGCGTTCTGGTTGGTTGCGATGGCTTTACTGATTGTCGGATTTACTGTTGGGTTGGTGA
TGCTGTTCAGAGGAGAGAATGGAAATGATCATTGTAGCTGGTGTCATTACTTAAGCTGTG
TGCCTACCTCTAAATGGAAATGTGACAACTGATGGAACAGAACAGTTTTCAACATCTTAC
TAATTTCACACTTGTGTGTCTTCCTTCGTCAGCTTCCTTCCTTCATTCTTTTCTTGTTTT
ATTTTTATATTTTTTAATTTTTTTCACACTGGTGTGCTTTCTTGCGTGTAAATTCATAGT
TCCTGATATTTAAAGTATATTTCTGTAGTTGTCTTTGGACAGAAAGGAAGTGTTGTTTTC
TTGGATTCACATGGGAATTTTTTCCCATCATATGGACACTGACCTAGTGATTACAGACAA
TAAAGTTATTTCAATGTATTTCAATTTA