Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_01s0150g00390.t01
CDS Infomation

cds chromosome:12X:1:22756417:22763125:1 gene:VIT_01s0150g00390 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA helicase [Source:UniProtKB/TrEMBL;Acc:D7TFL2]
Sequence

ATGGCGGGAGAAGCTTCGAACTCGGATCCACATCCACGGCCTAGCGATTCCGACGCTGGT
AATTCCGGAAATCCACCATCCACACCCGATTCGCCCACCTCTGCTGGTTTCAACACCGAT
CAACTCCCTCCCAGCCGCACTTCCGAGAACTACTCCGACGAAGATGAGGCCGCCGTCGAT
CCCCACATCATCAGAGACGAACCAGAAGATGTGGAGGACGAGGAGGAAGGCGAGGATCTT
TACAACGACAATTTCATGGACGATTATCGGAGGATGGATGAGCACGACCAGTATGAATCG
TTGGGACTTGACGAGTCTCTGGAAGATGAGAGGGATTTGGATCAGATCATGGAGGATCGA
AGGGCTGCTGAGATGGAGCTCGACACTAGAGATACTCGCATAACTGAGACGAAGCTTCCT
CGTCTTCTTCTCGACCAAGATACTGATGATGACAACCATAGGCCTTCAAAAAGATCAAGA
GCAGATTTTAGGCCTCCAGCTGCAGCAAGAAGCTATGATGATGCTGATGCGATGTTAAGT
TCACCAGGAAGGTCACGAGGACACTCACGAGAGGATGTTCCCATGACTGATCAGACTGAT
GATGAACCATACGAGGATGATGATGATGATGATGGTGAGTTCGAGATGTACCGTGTTCAA
GGAACGCTAAGGGAATGGGTTACTAGAGATGAAGTGCGCCGCTTCATTGCAAAGAAGTTT
AAGGAATTCTTACTCACCTATGTGAACCCAAAGAATGAACATGGTGATTTTGAATATGTG
CGACTGATAAATGAGATGGTCTCAGCTAACAAGTGTAGTTTGGAGATTGATTACAAACAG
TTCATCTATATCCATCCCAATATTGCTATCTGGCTGGCTGATGCCCCTCAATCTGTCCTT
GAGGTCATGGAAGACGTAGCCAAGAATGTTGTCTTTGATTTACATCCAAACTACAAAAAT
ATTCACCAAAAGATCTACGTCCGCATCACCAACTTACCGGTTTATGATCAGATACGCAAC
ATACGGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCT
GGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAATGTGGAATGATTCTG
GGGCCATTCTTCCAGAATTCATATTCAGAAGTCAAGGTTGGGTCTTGCCCAGAATGCCAA
TCAAAAGGACCATTCACTGTCAATATCGAGCAGACGATATACAGGAACTATCAAAAACTC
ACTCTCCAGGAGAGCCCAGGTATCGTGCCAGCAGGTCGTCTTCCTAGATACAAGGAAGTG
ATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTGAGGTCACAGGT
ATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAGAATGGATTTCCTGTATTTGCC
ACTGTAGTCGAGGCAAATTATGTCACAAAGAAGCAGGATCTCTTTTCTGCTTACAAACTT
ACCCAGGAGGACAAAGAGGAAATTGAGAAGTTGGCTAAAGATCCCAGGATTGGAGAAAGG
ATTGTCAAGTCCATTGCACCATCAATCTATGGCCACGAGGATATAAAAACTGCAATGGCT
CTTGCAATGTTTGGAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGAC
ATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAGTATGTT
GAAAAGACTGGGCAGAGAGCTGTGTATACCACTGGTAAAGGTGCTTCCGCTGTGGGTCTC
ACAGCATCAGTACACAAGGATCCTGTCACACGCGAATGGACACTTGAAGGAGGGGCTCTT
GTTCTAGCAGATAAAGGAATCTGTCTAATTGATGAGTTTGACAAGATGAATGATCAAGAC
AGAGTGAGCATCCACGAAGCAATGGAACAGCAGAGTATTAGCATATCAAAGGCTGGGATT
GTCACTTCTCTCCAGGCTCGCTGCTCTGTCATTGCTGCTGCAAATCCAATTGGAGGAAGA
TATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGG
TTTGATGTCCTCTGTGTTGTCAAGGACGTTGTTGACCCAGTCACAGACGAGATGCTTGCA
AAGTTTGTGGTTGATAGTCATTTCAAGTCACAACCCAAGGGCACTAATGTAGAGGATAAG
TCCTTGAGCAATTCCCAAGATGATATTCAACCATCTGCCAGGCCTCTTGATCCTGAGATA
CTCTCTCAAGATTTGCTGAAGAAATACTTGACTTACGCTAAGTTGAATGTCTTCCCAAGG
TTGCATGACGCAGATCTGAACAAGCTCACACATGTTTATGCTGAGCTGCGGAGAGAATCT
TCGCATGGACAAGGAGTCCCAATAGCAGTAAGGCATATAGAATCAATGATACGGATGTCT
GAAGCACATGCCAGAATGCACCTCAGACAGCATGTTACCCAGGAAGATGTTGACATGGCT
ATTCGTGTCCTGCTTGATTCTTTCATTTCAACACAAAAATTCGGGGTGCAGAAAGCCCTA
CAAAAGAGCTTCAAAAAGTACATGACCTTCAAAAAGGATTACAATGAACTGCTCCTGTAT
CTCCTAAGAGGGCTTGTCAAGGATGCACTGCACTTTGAAGAGATTGTATCTGGGTCAAGT
TCAGGACTTCCCCATATTGATGTGAAAGTGGAGGAGTTGCAAAGCAAGGCACAGGATTAT
GAAATCTATGATCTTAAACCATTCTTTTCAAGCACTCAGTTCTCTAGGGCCCACTTTGAG
TTGGATGCAGAGCGGGGTGTGATCAGGCATCGCCTTGCAAGATGA

Peptide Sequence

PEP ID

VIT_01s0150g00390.t01
PEP Infomation

pep chromosome:12X:1:22756417:22763125:1 gene:VIT_01s0150g00390 transcript:VIT_01s0150g00390.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA helicase [Source:UniProtKB/TrEMBL;Acc:D7TFL2]
Sequence

MAGEASNSDPHPRPSDSDAGNSGNPPSTPDSPTSAGFNTDQLPPSRTSENYSDEDEAAVD
PHIIRDEPEDVEDEEEGEDLYNDNFMDDYRRMDEHDQYESLGLDESLEDERDLDQIMEDR
RAAEMELDTRDTRITETKLPRLLLDQDTDDDNHRPSKRSRADFRPPAAARSYDDADAMLS
SPGRSRGHSREDVPMTDQTDDEPYEDDDDDDGEFEMYRVQGTLREWVTRDEVRRFIAKKF
KEFLLTYVNPKNEHGDFEYVRLINEMVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVL
EVMEDVAKNVVFDLHPNYKNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRS
GVFPQLQQVKYDCNKCGMILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNYQKL
TLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFA
TVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAMA
LAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGL
TASVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGI
VTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIVSRFDVLCVVKDVVDPVTDEMLA
KFVVDSHFKSQPKGTNVEDKSLSNSQDDIQPSARPLDPEILSQDLLKKYLTYAKLNVFPR
LHDADLNKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMA
IRVLLDSFISTQKFGVQKALQKSFKKYMTFKKDYNELLLYLLRGLVKDALHFEEIVSGSS
SGLPHIDVKVEELQSKAQDYEIYDLKPFFSSTQFSRAHFELDAERGVIRHRLAR

Transcript Sequence

Transcript ID

VIT_01s0150g00390.t01
Transcript Infomation

cdna chromosome:12X:1:22756417:22763125:1 gene:VIT_01s0150g00390 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA helicase [Source:UniProtKB/TrEMBL;Acc:D7TFL2]
Sequence

CTGACGCAGTAAAGCCTCACAAACATGGCGGGAGAAGCTTCGAACTCGGATCCACATCCA
CGGCCTAGCGATTCCGACGCTGGTAATTCCGGAAATCCACCATCCACACCCGATTCGCCC
ACCTCTGCTGGTTTCAACACCGATCAACTCCCTCCCAGCCGCACTTCCGAGAACTACTCC
GACGAAGATGAGGCCGCCGTCGATCCCCACATCATCAGAGACGAACCAGAAGATGTGGAG
GACGAGGAGGAAGGCGAGGATCTTTACAACGACAATTTCATGGACGATTATCGGAGGATG
GATGAGCACGACCAGTATGAATCGTTGGGACTTGACGAGTCTCTGGAAGATGAGAGGGAT
TTGGATCAGATCATGGAGGATCGAAGGGCTGCTGAGATGGAGCTCGACACTAGAGATACT
CGCATAACTGAGACGAAGCTTCCTCGTCTTCTTCTCGACCAAGATACTGATGATGACAAC
CATAGGCCTTCAAAAAGATCAAGAGCAGATTTTAGGCCTCCAGCTGCAGCAAGAAGCTAT
GATGATGCTGATGCGATGTTAAGTTCACCAGGAAGGTCACGAGGACACTCACGAGAGGAT
GTTCCCATGACTGATCAGACTGATGATGAACCATACGAGGATGATGATGATGATGATGGT
GAGTTCGAGATGTACCGTGTTCAAGGAACGCTAAGGGAATGGGTTACTAGAGATGAAGTG
CGCCGCTTCATTGCAAAGAAGTTTAAGGAATTCTTACTCACCTATGTGAACCCAAAGAAT
GAACATGGTGATTTTGAATATGTGCGACTGATAAATGAGATGGTCTCAGCTAACAAGTGT
AGTTTGGAGATTGATTACAAACAGTTCATCTATATCCATCCCAATATTGCTATCTGGCTG
GCTGATGCCCCTCAATCTGTCCTTGAGGTCATGGAAGACGTAGCCAAGAATGTTGTCTTT
GATTTACATCCAAACTACAAAAATATTCACCAAAAGATCTACGTCCGCATCACCAACTTA
CCGGTTTATGATCAGATACGCAACATACGGCAGATTCATTTGAACACCATGATTCGTATT
GGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGAC
TGCAACAAATGTGGAATGATTCTGGGGCCATTCTTCCAGAATTCATATTCAGAAGTCAAG
GTTGGGTCTTGCCCAGAATGCCAATCAAAAGGACCATTCACTGTCAATATCGAGCAGACG
ATATACAGGAACTATCAAAAACTCACTCTCCAGGAGAGCCCAGGTATCGTGCCAGCAGGT
CGTCTTCCTAGATACAAGGAAGTGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCG
GGGGAAGAGATTGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACG
AAGAATGGATTTCCTGTATTTGCCACTGTAGTCGAGGCAAATTATGTCACAAAGAAGCAG
GATCTCTTTTCTGCTTACAAACTTACCCAGGAGGACAAAGAGGAAATTGAGAAGTTGGCT
AAAGATCCCAGGATTGGAGAAAGGATTGTCAAGTCCATTGCACCATCAATCTATGGCCAC
GAGGATATAAAAACTGCAATGGCTCTTGCAATGTTTGGAGGCCAAGAAAAAAATGTTGAA
GGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCC
AAATCACAGTTTTTAAAGTATGTTGAAAAGACTGGGCAGAGAGCTGTGTATACCACTGGT
AAAGGTGCTTCCGCTGTGGGTCTCACAGCATCAGTACACAAGGATCCTGTCACACGCGAA
TGGACACTTGAAGGAGGGGCTCTTGTTCTAGCAGATAAAGGAATCTGTCTAATTGATGAG
TTTGACAAGATGAATGATCAAGACAGAGTGAGCATCCACGAAGCAATGGAACAGCAGAGT
ATTAGCATATCAAAGGCTGGGATTGTCACTTCTCTCCAGGCTCGCTGCTCTGTCATTGCT
GCTGCAAATCCAATTGGAGGAAGATATGATTCCTCGAAGACATTTTCACAAAATGTTGAA
TTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGGACGTTGTTGAC
CCAGTCACAGACGAGATGCTTGCAAAGTTTGTGGTTGATAGTCATTTCAAGTCACAACCC
AAGGGCACTAATGTAGAGGATAAGTCCTTGAGCAATTCCCAAGATGATATTCAACCATCT
GCCAGGCCTCTTGATCCTGAGATACTCTCTCAAGATTTGCTGAAGAAATACTTGACTTAC
GCTAAGTTGAATGTCTTCCCAAGGTTGCATGACGCAGATCTGAACAAGCTCACACATGTT
TATGCTGAGCTGCGGAGAGAATCTTCGCATGGACAAGGAGTCCCAATAGCAGTAAGGCAT
ATAGAATCAATGATACGGATGTCTGAAGCACATGCCAGAATGCACCTCAGACAGCATGTT
ACCCAGGAAGATGTTGACATGGCTATTCGTGTCCTGCTTGATTCTTTCATTTCAACACAA
AAATTCGGGGTGCAGAAAGCCCTACAAAAGAGCTTCAAAAAGTACATGACCTTCAAAAAG
GATTACAATGAACTGCTCCTGTATCTCCTAAGAGGGCTTGTCAAGGATGCACTGCACTTT
GAAGAGATTGTATCTGGGTCAAGTTCAGGACTTCCCCATATTGATGTGAAAGTGGAGGAG
TTGCAAAGCAAGGCACAGGATTATGAAATCTATGATCTTAAACCATTCTTTTCAAGCACT
CAGTTCTCTAGGGCCCACTTTGAGTTGGATGCAGAGCGGGGTGTGATCAGGCATCGCCTT
GCAAGATGATGCCAAAATGTAACTAAATTAATGCTCGGACAGTGAAGTTTGCAAAGCAAG
CAAAGTTAATGGTCCTAAATTGTTCTGGTTATTCAGATGAAGCAGAGTGGAATTCAACAT
CAACCCAGATCTCATCTGCTCTTTAATGTATTGAAATTAAAACAGGATTTCTATTAGACA
AACAAATTACAGTGATTTGAATAGGGATGGGATTAGTACTGAATGATGGGTATTGAAGTG
AATTTTAGGGACTGAACATTTCCCATTTGGTTTTAATAAGTTGTGCAGGTAAGGATAGAA
AAA