Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_01s0011g01960.t01
CDS Infomation

cds chromosome:12X:1:1683597:1691104:1 gene:VIT_01s0011g01960 gene_biotype:protein_coding transcript_biotype:protein_coding description:Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:D7T9I6]
Sequence

ATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGTCCTTCGGGAAAGCTTGTT
CAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAGCT
GCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCA
TCGGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAGCGGCATGGGT
CCTGATTCTCGAGTTTTGGTTCGAAAGAGTAGGAAGCAGGCAGAGCAGTATCACAGGCTA
TATAAGGAATCAATCCCTGTCACGCAACTTGTGAGGGAGACTGCAGCTGTTATGCAGGAG
TTCACTCAATCTGGTGGTGTAAGGCCCTTTGGAGTATCACTGTTGGTTGCTGGTTTTGAT
GACAATGGTCCACAATTGTACCAGGTGGATCCATCAGGTTCATATTTCTCATGGAAAGCC
TCCGCAATGGGGAAGAATGTCTCAAATGCAAAGACATTTCTTGAGAAGAGGTACACTGAT
GATATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGATTTGAA
GGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCACTGACAGAAAATTCAGG
GTCTTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTGGAGTAG

Peptide Sequence

PEP ID

VIT_01s0011g01960.t01
PEP Infomation

pep chromosome:12X:1:1683597:1691104:1 gene:VIT_01s0011g01960 transcript:VIT_01s0011g01960.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:D7T9I6]
Sequence

MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDEA
SVQKIQVLTPNIGVVYSGMGPDSRVLVRKSRKQAEQYHRLYKESIPVTQLVRETAAVMQE
FTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTD
DMELDDAVHTAILTLKEGFEGQISSKNIEIGIIGTDRKFRVLTPAEIDDYLAEVE

Transcript Sequence

Transcript ID

VIT_01s0011g01960.t01
Transcript Infomation

cdna chromosome:12X:1:1683597:1691104:1 gene:VIT_01s0011g01960 gene_biotype:protein_coding transcript_biotype:protein_coding description:Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:D7T9I6]
Sequence

AAAACGCCAAGTTTCAGTCCCTTTTCTCTCTACTTTCCTTCTCTAGATTTTCTCTGTAAA
CAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGTCCTTCGGGAAAGC
TTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCA
AAGCTGCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATG
AGGCATCGGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAGCGGCA
TGGGTCCTGATTCTCGAGTTTTGGTTCGAAAGAGTAGGAAGCAGGCAGAGCAGTATCACA
GGCTATATAAGGAATCAATCCCTGTCACGCAACTTGTGAGGGAGACTGCAGCTGTTATGC
AGGAGTTCACTCAATCTGGTGGTGTAAGGCCCTTTGGAGTATCACTGTTGGTTGCTGGTT
TTGATGACAATGGTCCACAATTGTACCAGGTGGATCCATCAGGTTCATATTTCTCATGGA
AAGCCTCCGCAATGGGGAAGAATGTCTCAAATGCAAAGACATTTCTTGAGAAGAGGTACA
CTGATGATATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGAT
TTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCACTGACAGAAAAT
TCAGGGTCTTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTGGAGTAGCTTGCCC
TGTTTCCAGAAAACACTTTGAAGAAAAGGAAAACAAAAACAAAATTTATGATTCTGGTTT
ATTATGTTGCATGGACTTTTGTTTGTGGTACCCACCTTGCTGTTCAGCAGGAAAAGGCAA
TTTGATGTAAGATTAATGAACGTGCTATGAATTGAGGATTTATTTAAAACCTACCCAGAA
CGGTGAAGCAAACAAATATTCAAGATTTTAACCC