Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_00s0179g00260.t01
CDS Infomation

cds chromosome:12X:Un:7509724:7513041:-1 gene:VIT_00s0179g00260 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:F6HBJ0]
Sequence

ATGTCCACCACAATCACAGGCAGCTATTTTCCGCATTATGATTGTGGCACAATCATCCTC
AATGTGAGCGCTGCCACATTCACCAAAGCCCAAAAGAGGTGGCGGGTTGCCTATGTTGCC
ATCTGCTCTTTCCGGGTCCTGCTTTCTCTCTCCAAACAGAATGTAATGAGGCGAAAGGCC
ACCAGTACTGCTTTACTGCACTCTCATTTAACTGTTGATATCCAGCCACCCACTTCCTAT
CATCATGATGATCAAAGCGACCTTACAGAGATGGTGAAGGAGAAAGACCTGATTGCTCTT
CGGGGTTTTGGAGGAGTAGAAGGTGTCGCAGCCACTCTTTTGATCGACCCTCAGCATGGA
ATCCTGGGAAACGAGGATGATGTTCGCAGGAGACGAGACAAGTTTGGTTCCAACACTTAT
TACAAGCCACCCCCAAAAGGGCTCTTCTATTTTGTTGTGGATGCTTTCAAGGATACCACA
ATTCTCATATTGCTGGTCTGTGCTGCACTTTCTCTTGGCTTCGGCATCAAAGAACATGGA
CCACAGGAAGGTTGGTACGAGGGTGGAAGTATATTTGTGGCTGTCTTCCTTGTTATCTCT
GTAGCTGCACTTAGTAATTTCAGACAGGAGAGACAATTCGACAAGTTATCCAAGATTAGT
AACAATATAAAAATTGATGTTGCAAGAGATGGAAGAAGACAAGAAATCTCTATTTTCGAT
ATTGTAGTTGGAGATGTGGTCTTTCTAAATATTGGAGATCAAATACCAGCTGATGGACTG
TTCTTAGAAGGGCATTCCATGGAAGTGGATGAGTCGAGCATGACAGGAGAGAGCGACCAT
GTGGAAGTTGATCGTGAGAGGAACCCATTCCTGTTTTCTGGTTCAAAGGTGGCAGATGGA
TATGCTCGAATGCTCGTGACGTCAGTGGGGATGAACACTGCATGGGGTGAGATGATGAGT
TCAATATCGCGTGATACTAATGAACGAACCCCATTACAAGCAAGGCTCGACAAATTAACC
TCATCTATCGGAAAGGTTGGTCTTGCAGTTGCTTTCCTAGTTCTTGTAGTCTTATTAATA
CGTTACTTTACGGGGCATACGAAAGATGAGAATGGGCAAAGGGAATATAATGGTAGCGAT
AAAGACATAAATGATGTGTTGAATTCAGTTGTGAATATTGTAGCAGCTGCAGTTACCATT
ATTGTAGTGGCTATTCCTGAGGGTTTGCCATTAGCTGTAACCCTCACACTAGCTTACTCT
ATGAAAAGAATGATGGCTGATCACGCAATGGTTAGGAAACTTTCAGCCTGTGAAACAATG
GGCTCAGCTACTATTATTTGTACCGATAAAACGGGCACCTTGACAATGAATCAGATGAAA
GTGACCAAGTTTTGGCTTGGCCAAGAGGAGATGGGAGAAATTCCTTCTAATGCAATTACT
CCATGCATTCTTGAATTGTTCCGTCAAGGAGTCGGGTTAAATACAACGGGTAGCGTTTAC
AGACCTGCTTCAGGAGCTGTCTTTGAGTTTTCTGGTAGTCCAACTGAGAAAGCAATTCTC
TCTTGGGCTGTCCAGGAATTGGGCATGGATGTGGAGCAATTGAAGCAAACTTATAGCATC
CTCCACGTTGAAACTTTCAATTCTGAAAAGAAAAGAAGTGGGGTTTCAATGAGGAAGAAT
GCCGATAATACCATCCATGTGCACTGGAAAGGAGCTGCTGAGATGGTACTACAAATGTGT
TCAAATTACTACGAGACTAGTGGGACTATAAAGTCTATGGATGAAGATTCAAGGATGCAA
TTAGAGAAAATAATTCAAGGCATGGCAGCTAGTAGCCTGCGGTGCATTGCTTTTGCTTAT
AAGCAAATTTCAGAAGCGGAAATAGAATACAATGATGATGGGAGGGCCCACCAAAAGCTA
AATGAAAACGGATTAACCTTGCTAGGTATAGTTGGGCTCAAGGACCCATGTCGGCCAGGG
GTCAAGAGAGCCGTGGAAATTTGTAAATCTGCAGGAGTGGAAATCAAAATGATCACGGGG
GACAATGTTTTCACAGCTAAAGCTATAGCCACAGAATGTGGGATACTTGGGTCTGATGAT
ACAGAACATAAGGGAGCAGTGGTAGAAGGGGTCGAATTCCGAAACTACACCCACGAAGAG
AGAATGCAGAAGATTGATAAAATTCGTGTGATGGCAAGGTCCTCACCCTTTGACAAGCTT
TTGATGGTACAGTGCTTGAAGCAAAAAGGTGAGGTGGTTGCAGTTACAGGGGATGGCACA
AATGATGCACCTGCTTTAAAGGAAGCTGATATAGGACTCTCCATGGGCATTCAAGGTACT
GAGGTGGCCAAGGAGAGTTCGGATATTGTTATCTTGGATGACAATTTCACTTCTGTTGCC
ACGGTGTTGAGGTGGGGTCGATGTGTTTACAACAATATCCAGAAATTCATCCAATTTCAA
CTCACCGTGAATGTTGCGGCTCTTGTGATTAACTTTATTTCAGCAGTTTCTGCAGGCGAA
GTTCCCCTCACAGCTGTTCAACTGTTGTGGGTAAACCTAATTATGGACACATTGGGAGCT
TTGGCTCTTGCTACAGATCGGCCCACCAATGAACTGATGCAGAGACCACCCGTTGGTCGC
ACTGAACCCCTCATAACCAATGTTATGTGGAGGAACCTTCTGGCTCAAGCTCTATACCAA
ATAGCCGTCCTCTTGACCTTACAGTTCAAGGGTGAGTCCATCTTTAATGTGGATGAGAAG
GTGAATGATACTCTAATTTTCAACACTTTTGTCCTTTGCCAAGTTTTTAATGAGTTCAAT
GCAAGGAAGTTGGAGAAGCAGAACGTATTCAAGGGCATTCACAAGAACAAGTTGTTTCTT
GGGATTGTGGGATTTACAATTGTTCTTCAGGTTGTGATGGTGGAGTTCCTAAAGAAATTT
GCAGATACAGTGAATTTGAATGGGTTGCAATGGGCAATTTGCATTGCAATTGCAGCTGTA
TCATGGCCAATTGGTTGGATTGTGAAGTTCATACCTGTTTCAGACACACCATTCCTCAGT
TACATCAAGTGGGCAGGACAAGCATTCGGAAGGATTCTACACCTATCATATCTCTCTTTC
TCCAGTCTTGGAAGGGGCTGTGTGAAAAGGTGA

Peptide Sequence

PEP ID

VIT_00s0179g00260.t01
PEP Infomation

pep chromosome:12X:Un:7509724:7513041:-1 gene:VIT_00s0179g00260 transcript:VIT_00s0179g00260.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:F6HBJ0]
Sequence

MSTTITGSYFPHYDCGTIILNVSAATFTKAQKRWRVAYVAICSFRVLLSLSKQNVMRRKA
TSTALLHSHLTVDIQPPTSYHHDDQSDLTEMVKEKDLIALRGFGGVEGVAATLLIDPQHG
ILGNEDDVRRRRDKFGSNTYYKPPPKGLFYFVVDAFKDTTILILLVCAALSLGFGIKEHG
PQEGWYEGGSIFVAVFLVISVAALSNFRQERQFDKLSKISNNIKIDVARDGRRQEISIFD
IVVGDVVFLNIGDQIPADGLFLEGHSMEVDESSMTGESDHVEVDRERNPFLFSGSKVADG
YARMLVTSVGMNTAWGEMMSSISRDTNERTPLQARLDKLTSSIGKVGLAVAFLVLVVLLI
RYFTGHTKDENGQREYNGSDKDINDVLNSVVNIVAAAVTIIVVAIPEGLPLAVTLTLAYS
MKRMMADHAMVRKLSACETMGSATIICTDKTGTLTMNQMKVTKFWLGQEEMGEIPSNAIT
PCILELFRQGVGLNTTGSVYRPASGAVFEFSGSPTEKAILSWAVQELGMDVEQLKQTYSI
LHVETFNSEKKRSGVSMRKNADNTIHVHWKGAAEMVLQMCSNYYETSGTIKSMDEDSRMQ
LEKIIQGMAASSLRCIAFAYKQISEAEIEYNDDGRAHQKLNENGLTLLGIVGLKDPCRPG
VKRAVEICKSAGVEIKMITGDNVFTAKAIATECGILGSDDTEHKGAVVEGVEFRNYTHEE
RMQKIDKIRVMARSSPFDKLLMVQCLKQKGEVVAVTGDGTNDAPALKEADIGLSMGIQGT
EVAKESSDIVILDDNFTSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFISAVSAGE
VPLTAVQLLWVNLIMDTLGALALATDRPTNELMQRPPVGRTEPLITNVMWRNLLAQALYQ
IAVLLTLQFKGESIFNVDEKVNDTLIFNTFVLCQVFNEFNARKLEKQNVFKGIHKNKLFL
GIVGFTIVLQVVMVEFLKKFADTVNLNGLQWAICIAIAAVSWPIGWIVKFIPVSDTPFLS
YIKWAGQAFGRILHLSYLSFSSLGRGCVKR

Transcript Sequence

Transcript ID

VIT_00s0179g00260.t01
Transcript Infomation

cdna chromosome:12X:Un:7509724:7513041:-1 gene:VIT_00s0179g00260 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:F6HBJ0]
Sequence

CTAACTTATTTTTCTCCACCCACCTTCCTCTATCACCTATCCCTCCGCTCCTTTCTCTTC
CTCTTCAAAACCATGTCCACCACAATCACAGGCAGCTATTTTCCGCATTATGATTGTGGC
ACAATCATCCTCAATGTGAGCGCTGCCACATTCACCAAAGCCCAAAAGAGGTGGCGGGTT
GCCTATGTTGCCATCTGCTCTTTCCGGGTCCTGCTTTCTCTCTCCAAACAGAATGTAATG
AGGCGAAAGGCCACCAGTACTGCTTTACTGCACTCTCATTTAACTGTTGATATCCAGCCA
CCCACTTCCTATCATCATGATGATCAAAGCGACCTTACAGAGATGGTGAAGGAGAAAGAC
CTGATTGCTCTTCGGGGTTTTGGAGGAGTAGAAGGTGTCGCAGCCACTCTTTTGATCGAC
CCTCAGCATGGAATCCTGGGAAACGAGGATGATGTTCGCAGGAGACGAGACAAGTTTGGT
TCCAACACTTATTACAAGCCACCCCCAAAAGGGCTCTTCTATTTTGTTGTGGATGCTTTC
AAGGATACCACAATTCTCATATTGCTGGTCTGTGCTGCACTTTCTCTTGGCTTCGGCATC
AAAGAACATGGACCACAGGAAGGTTGGTACGAGGGTGGAAGTATATTTGTGGCTGTCTTC
CTTGTTATCTCTGTAGCTGCACTTAGTAATTTCAGACAGGAGAGACAATTCGACAAGTTA
TCCAAGATTAGTAACAATATAAAAATTGATGTTGCAAGAGATGGAAGAAGACAAGAAATC
TCTATTTTCGATATTGTAGTTGGAGATGTGGTCTTTCTAAATATTGGAGATCAAATACCA
GCTGATGGACTGTTCTTAGAAGGGCATTCCATGGAAGTGGATGAGTCGAGCATGACAGGA
GAGAGCGACCATGTGGAAGTTGATCGTGAGAGGAACCCATTCCTGTTTTCTGGTTCAAAG
GTGGCAGATGGATATGCTCGAATGCTCGTGACGTCAGTGGGGATGAACACTGCATGGGGT
GAGATGATGAGTTCAATATCGCGTGATACTAATGAACGAACCCCATTACAAGCAAGGCTC
GACAAATTAACCTCATCTATCGGAAAGGTTGGTCTTGCAGTTGCTTTCCTAGTTCTTGTA
GTCTTATTAATACGTTACTTTACGGGGCATACGAAAGATGAGAATGGGCAAAGGGAATAT
AATGGTAGCGATAAAGACATAAATGATGTGTTGAATTCAGTTGTGAATATTGTAGCAGCT
GCAGTTACCATTATTGTAGTGGCTATTCCTGAGGGTTTGCCATTAGCTGTAACCCTCACA
CTAGCTTACTCTATGAAAAGAATGATGGCTGATCACGCAATGGTTAGGAAACTTTCAGCC
TGTGAAACAATGGGCTCAGCTACTATTATTTGTACCGATAAAACGGGCACCTTGACAATG
AATCAGATGAAAGTGACCAAGTTTTGGCTTGGCCAAGAGGAGATGGGAGAAATTCCTTCT
AATGCAATTACTCCATGCATTCTTGAATTGTTCCGTCAAGGAGTCGGGTTAAATACAACG
GGTAGCGTTTACAGACCTGCTTCAGGAGCTGTCTTTGAGTTTTCTGGTAGTCCAACTGAG
AAAGCAATTCTCTCTTGGGCTGTCCAGGAATTGGGCATGGATGTGGAGCAATTGAAGCAA
ACTTATAGCATCCTCCACGTTGAAACTTTCAATTCTGAAAAGAAAAGAAGTGGGGTTTCA
ATGAGGAAGAATGCCGATAATACCATCCATGTGCACTGGAAAGGAGCTGCTGAGATGGTA
CTACAAATGTGTTCAAATTACTACGAGACTAGTGGGACTATAAAGTCTATGGATGAAGAT
TCAAGGATGCAATTAGAGAAAATAATTCAAGGCATGGCAGCTAGTAGCCTGCGGTGCATT
GCTTTTGCTTATAAGCAAATTTCAGAAGCGGAAATAGAATACAATGATGATGGGAGGGCC
CACCAAAAGCTAAATGAAAACGGATTAACCTTGCTAGGTATAGTTGGGCTCAAGGACCCA
TGTCGGCCAGGGGTCAAGAGAGCCGTGGAAATTTGTAAATCTGCAGGAGTGGAAATCAAA
ATGATCACGGGGGACAATGTTTTCACAGCTAAAGCTATAGCCACAGAATGTGGGATACTT
GGGTCTGATGATACAGAACATAAGGGAGCAGTGGTAGAAGGGGTCGAATTCCGAAACTAC
ACCCACGAAGAGAGAATGCAGAAGATTGATAAAATTCGTGTGATGGCAAGGTCCTCACCC
TTTGACAAGCTTTTGATGGTACAGTGCTTGAAGCAAAAAGGTGAGGTGGTTGCAGTTACA
GGGGATGGCACAAATGATGCACCTGCTTTAAAGGAAGCTGATATAGGACTCTCCATGGGC
ATTCAAGGTACTGAGGTGGCCAAGGAGAGTTCGGATATTGTTATCTTGGATGACAATTTC
ACTTCTGTTGCCACGGTGTTGAGGTGGGGTCGATGTGTTTACAACAATATCCAGAAATTC
ATCCAATTTCAACTCACCGTGAATGTTGCGGCTCTTGTGATTAACTTTATTTCAGCAGTT
TCTGCAGGCGAAGTTCCCCTCACAGCTGTTCAACTGTTGTGGGTAAACCTAATTATGGAC
ACATTGGGAGCTTTGGCTCTTGCTACAGATCGGCCCACCAATGAACTGATGCAGAGACCA
CCCGTTGGTCGCACTGAACCCCTCATAACCAATGTTATGTGGAGGAACCTTCTGGCTCAA
GCTCTATACCAAATAGCCGTCCTCTTGACCTTACAGTTCAAGGGTGAGTCCATCTTTAAT
GTGGATGAGAAGGTGAATGATACTCTAATTTTCAACACTTTTGTCCTTTGCCAAGTTTTT
AATGAGTTCAATGCAAGGAAGTTGGAGAAGCAGAACGTATTCAAGGGCATTCACAAGAAC
AAGTTGTTTCTTGGGATTGTGGGATTTACAATTGTTCTTCAGGTTGTGATGGTGGAGTTC
CTAAAGAAATTTGCAGATACAGTGAATTTGAATGGGTTGCAATGGGCAATTTGCATTGCA
ATTGCAGCTGTATCATGGCCAATTGGTTGGATTGTGAAGTTCATACCTGTTTCAGACACA
CCATTCCTCAGTTACATCAAGTGGGCAGGACAAGCATTCGGAAGGATTCTACACCTATCA
TATCTCTCTTTCTCCAGTCTTGGAAGGGGCTGTGTGAAAAGGTGA