| Root shape (length/width) | Morphology/Growth | NA | BRMS-303-2 | NA | 0 | 0 | NA | AAC/CTG6 | NA | 0 | 0 | | QTL analysis | Huang-he hong wan x Utsugi-gensuke | F2 | Huang-he hong wan x Utsugi-gensuke LG_03 | 39.7 | 2.42 | | 10.1270/jsbbs.58.55 | t3726.T000013 |
| Thickening | Morphology/Growth | NA | ACA/CTT5 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | Huang-he hong wan x Utsugi-gensuke | F2 | Huang-he hong wan x Utsugi-gensuke LG_04 | 77.6 | 3.03 | | 10.1270/jsbbs.58.55 | t3726.T000014 |
| Thickening | Morphology/Growth | NA | AAG/CTA12 | NA | 0 | 0 | NA | ACT/CTT8 | NA | 0 | 0 | | QTL analysis | Huang-he hong wan x Utsugi-gensuke | F2 | Huang-he hong wan x Utsugi-gensuke LG_08 | 86 | 4.51 | | 10.1270/jsbbs.58.55 | t3726.T000015 |
| Root shape (length/width) | Morphology/Growth | NA | ACA/CTG5 | NA | 0 | 0 | NA | ACC/CTA6 | NA | 0 | 0 | | QTL analysis | Huang-he hong wan x Utsugi-gensuke | F2 | Huang-he hong wan x Utsugi-gensuke LG_09 | 45.4 | 2.88 | | 10.1270/jsbbs.58.55 | t3726.T000016 |
| Red pigmentation | Morphology/Growth | NA | SLG | NA | 0 | 0 | NA | AAG/CAG10 | NA | 0 | 0 | | QTL analysis | Huang-he hong wan x Utsugi-gensuke | F2 | Huang-he hong wan x Utsugi-gensuke LG_11 | 29.1 | 9.58 | | 10.1270/jsbbs.58.55 | t3726.T000017 |
| RDW (g), root dry weight | Morphology/Growth | NA | BRMS058_550 | NA | 0 | 0 | NA | | NA | 0 | 0 | qRDW5 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_05 | 124.3 | 7.28 | | 10.1007/s00122-012-1858-y | t3726.T000023 |
| RDW (g), root dry weight | Morphology/Growth | NA | NAUrp705_644 | NA | 0 | 0 | NA | | NA | 0 | 0 | qRDW6 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_06 | 30.1 | 3.96 | | 10.1007/s00122-012-1858-y | t3726.T000024 |
| RDW (g), root dry weight | Morphology/Growth | NA | EM3me6_291 | NA | 0 | 0 | NA | | NA | 0 | 0 | qRDW9 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_09 | 148.5 | 3.58 | | 10.1007/s00122-012-1858-y | t3726.T000025 |
| RL (cm), root length | Morphology/Growth | NA | Na10F06_545 | NA | 0 | 0 | NA | | NA | 0 | 0 | qRL1 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_01 | 17.3 | 3.38 | | 10.1007/s00122-012-1858-y | t3726.T000026 |
| RL (cm), root length | Morphology/Growth | NA | RamRM24-568_618 | NA | 0 | 0 | NA | | NA | 0 | 0 | qRL3.1 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_03 | 124.7 | 3.26 | | 10.1007/s00122-012-1858-y | t3726.T000027 |
| RL (cm), root length | Morphology/Growth | NA | PM2fc8_314 | NA | 0 | 0 | NA | | NA | 0 | 0 | qRL3.2 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_03 | 135.3 | 3.64 | | 10.1007/s00122-012-1858-y | t3726.T000028 |
| RL (cm), root length | Morphology/Growth | NA | NAUrp782_643 | NA | 0 | 0 | NA | | NA | 0 | 0 | qRL5 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_05 | 25 | 4.89 | | 10.1007/s00122-012-1858-y | t3726.T000029 |
| RL (cm), root length | Morphology/Growth | NA | EM4odd48_365 | NA | 0 | 0 | NA | | NA | 0 | 0 | qRL7 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_07 | 179.7 | 4.06 | | 10.1007/s00122-012-1858-y | t3726.T000030 |
| SDW (g), shoot dry weight | Morphology/Growth | NA | NAUJKC19_565 | NA | 0 | 0 | NA | | NA | 0 | 0 | qSDW2 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_02 | 84.6 | 4.74 | | 10.1007/s00122-012-1858-y | t3726.T000033 |
| SDW (g), shoot dry weight | Morphology/Growth | NA | Na10F08_665 | NA | 0 | 0 | NA | | NA | 0 | 0 | qSDW6 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_06 | 127.4 | 3.78 | | 10.1007/s00122-012-1858-y | t3726.T000034 |
| SDW (g), shoot dry weight | Morphology/Growth | NA | Ol14E06_720 | NA | 0 | 0 | NA | | NA | 0 | 0 | qSDW9 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_09 | 21.8 | 4.62 | | 10.1007/s00122-012-1858-y | t3726.T000035 |
| SH (cm), shoot height | Morphology/Growth | NA | EM16ga18_384 | NA | 0 | 0 | NA | | NA | 0 | 0 | qSH2 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_02 | 96.2 | 4.25 | | 10.1007/s00122-012-1858-y | t3726.T000036 |
| SH (cm), shoot height | Morphology/Growth | NA | RGA12F12R_300 | NA | 0 | 0 | NA | | NA | 0 | 0 | qSH5 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_05 | 91 | 3.64 | | 10.1007/s00122-012-1858-y | t3726.T000037 |
| TDW (g), total dry weight | Morphology/Growth | NA | RamM2-706_616 | NA | 0 | 0 | NA | | NA | 0 | 0 | qTDW1.1 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_01 | 44.5 | 3.54 | | 10.1007/s00122-012-1858-y | t3726.T000038 |
| TDW (g), total dry weight | Morphology/Growth | NA | PM2em11_367 | NA | 0 | 0 | NA | | NA | 0 | 0 | qTDW1.2 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_01 | 106.8 | 5.6 | | 10.1007/s00122-012-1858-y | t3726.T000039 |
| TDW (g), total dry weight | Morphology/Growth | NA | PM17em10_327 | NA | 0 | 0 | NA | | NA | 0 | 0 | qTDW5 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_05 | 37.8 | 4.43 | | 10.1007/s00122-012-1858-y | t3726.T000040 |
| TDW (g), total dry weight | Morphology/Growth | NA | NAUrp586_752 | NA | 0 | 0 | NA | | NA | 0 | 0 | qTDW6 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_06 | 182.5 | 3.14 | | 10.1007/s00122-012-1858-y | t3726.T000041 |
| TDW (g), total dry weight | Morphology/Growth | NA | PM18odd44_362 | NA | 0 | 0 | NA | | NA | 0 | 0 | qTDW7 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_07 | 32.1 | 4.84 | | 10.1007/s00122-012-1858-y | t3726.T000042 |
| TDW (g), total dry weight | Morphology/Growth | NA | PM36em8_423 | NA | 0 | 0 | NA | | NA | 0 | 0 | qTDW9 | QTL analysis | Nau-Dysx x Nau-Yh | F2 | Nau-Dysx x Nau-Yh LG_09 | 64.9 | 6.2 | | 10.1007/s00122-012-1858-y | t3726.T000043 |
| PS, Plant shape | Morphology/Growth | NA | RsHH019 | NA | 0 | 0 | NA | E6M4_87 | NA | 0 | 0 | | QTL analysis | rat-tail radish x Haru-S | RIL | rat-tail radish x Haru-S LG_R01 | 45 | 3.8 | | 10.1270/jsbbs.63.218 | t3726.T000045 |
| MW, Main root weight (g) | Morphology/Growth | NA | REL-13 | NA | 0 | 0 | NA | RES-5/HapII | NA | 0 | 0 | | QTL analysis | rat-tail radish x Haru-S | RIL | rat-tail radish x Haru-S LG_R02 | 48.9 | 6.9 | | 10.1270/jsbbs.63.218 | t3726.T000046 |
| Pubescence | Morphology/Growth | Rs1.0 | RM_1 | R4 | 12265152 | 12265435 | Rs1.0 | E5M8_427 | NA | 0 | 0 | | QTL analysis | rat-tail radish x Haru-S | RIL | rat-tail radish x Haru-S LG_R04 | 38.3 | 10.1 | | 10.1270/jsbbs.63.218 | t3726.T000047 |
| MW, Main root weight (g) | Morphology/Growth | NA | RES-1 | NA | 0 | 0 | NA | SLG_CAPS/PleI | NA | 0 | 0 | | QTL analysis | rat-tail radish x Haru-S | RIL | rat-tail radish x Haru-S LG_R07 | 24.9 | 11.7 | | 10.1270/jsbbs.63.218 | t3726.T000048 |
| WW, Whole plant weight (g) | Morphology/Growth | NA | AtSTS-1015 | NA | 0 | 0 | NA | REL-4 | NA | 4322497 | 4322742 | | QTL analysis | rat-tail radish x Haru-S | RIL | rat-tail radish x Haru-S LG_R08 | 2.8 | 3.8 | | 10.1270/jsbbs.63.218 | t3726.T000049 |
| Pubescence | Morphology/Growth | NA | RsSR104 | NA | 0 | 0 | NA | RsSA083 | NA | 0 | 0 | | QTL analysis | rat-tail radish x Haru-S | RIL | rat-tail radish x Haru-S LG_R09 | 77.1 | 13.6 | | 10.1270/jsbbs.63.218 | t3726.T000050 |
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