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アセンブル , シーケンス , Assemble , Sequence , Echinochloa phyllopogon , Rice barnyardgrass , タイヌビエ (phyllopogon種)

Echinochloa phyllopogon

Genome Assembly ID:t45619.G001

Sequence Name:EPH_r1.1

Details of the Assembled Genome Sequences

Assembly Name EPH_r1.1 Biological Sample R511
Number of Sequences 19 Number of Chromosomes 2n = 4X = 18
Total Length (bp) 1,002,757,761 N50 Length (bp) 58,069,259
Number of Genes 64,805 Number of Genes Source File Eph1.1.high.pep.fasta
Number of Genes Annotated by Hayai-annotation 64,805 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio Hifi, genetic mapping Read Depth 66.9X
Assembly Method Hifiasm Estimated Genome Size (Mb) 1,028
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Mitsuhiko P. Sato (Kazusa DNA Res Inst) Data Source Plant GARDEN
DOI/PMID 10.1101/2023.05.23.541891 Data Source URL https://plantgarden.jp/
BUSCO Version 5.0.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.9%[S:9.4%,D:89.5%],F:0.6%,M:0.5%,n:1614 BUSCO Gene (pep/cds) C:95.1%[S:15.7%,D:79.4%],F:1.7%,M:3.2%,n:1614

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