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アセンブル , シーケンス , Assemble , Sequence , Oryza glaberrima , African rice , イネ アフリカ種, アフリカイネ

Oryza glaberrima

Genome Assembly ID:t4538.G001

Sequence Name:Oryza_glaberrima_V1

Details of the Assembled Genome Sequences

Assembly Name Oryza_glaberrima_V1 Biological Sample IRGC96717
Number of Sequences 1,951 Number of Chromosomes 2n = 2x = 24
Total Length (bp) 316,419,574 N50 Length (bp) 23,192,814
Number of Genes 33,164 Number of Genes Source File Oryza_glaberrima.Oryza_glaberrima_V1.pep.all.fa
Number of Genes Annotated by Hayai-annotation 33,164 Hayai-Annotation Version zen_v2.0
Sequencing Method 454 Read Depth 30x
Assembly Method NA Estimated Genome Size (Mb) 411
Sequencing Method Comments NA Comments International Rice Germplasm Collection (IRGC) accession #96717, var. CG14
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Rod A Wing (University of Arizona), Mingsheng Chen (Chinese Academy of Sciences), Klaus F X Mayer (Helmholtz Center Munich), Mingsheng Chen (Chinese Academy of Sciences) Data Source Ensembl
DOI/PMID 10.1038/ng.3044 Data Source URL http://plants.ensembl.org/index.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:88.4%[S:86.0%,D:2.4%],F:2.1%,M:9.5%,n:1614 BUSCO Gene (pep/cds) C:84.7%[S:79.2%,D:5.5%],F:4.1%,M:11.2%,n:1614

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