Oryza sativa| ID | Population Name | Line List | Variant Type |
Reference Sequence | Sequence Type | Variant Counts | Data Source | Comments | Download | TASUKE+ | JBrowse | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Table | Vcf file |
|||||||||||
|
t4530.SNP000001 |
Oryza_sativa_SRA_99_lines_20191107 |
|
SNPs, In/dels |
WGS |
3,904,077 | Plant GARDEN |
Bwa/bcftools 1.9, (QUAL≥200, 10≤DP≤200, max-missing=0.7) |
|
|
|
||
|
t4530.SNP000002 |
Oryza_rufipogon_NBRP_43_lines_20210615 |
|
SNPs, In/dels |
WGS |
1,022,814 | Plant GARDEN |
DRAGEN, (QUAL≥30, 10≤DP≤100,GQ≥20, max-missing=0.7) |
|
|
|
||
