Plant GARDEN How To ▶︎

JA

EN

Oryza sativa

Assembly Name:IRGSP-1.0

Gene File:Oryza_sativa.IRGSP-1.0.pep.all.fa.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
Os12t0123800-01
PEP
Os12t0123800-01
Position on the Genome Chromosome 12
Start Position 1146995
End Position 1148742
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI02101994
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
NAC domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
NAC domain-containing protein
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF02365
Pfam Description Details
InterPro ID
IPR003441,IPR036093
InterPro Description Details
GO ID
GO:0043565,GO:0006355
GO Description Details
GOslim ID
GO:0003676,GO:0006351,GO:0050789
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
NAC family protein
Best hit taxonomy Species Oryza sativa Indica Group
Family Poaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , subsp. japonica, cv. Nipponbare , Poaceae , イネ科 , Oryza , イネ属 , Rice, Indica rice, Japonica rice, Nagina-22, N22 , イネ, イネ インディカ亜種, イネ ジャポニカ亜種, イネaus亜種N22 Indica rice , イネ ジャポニカ亜種

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
NAC domain-containing protein
OrthoDB(1 item)
179783at33090
NAC domain
Pfam(1 item)
 
No apical meristem (NAM) protein
InterPro(2 items)
Gene ontology(2 items)
MF
sequence-specific DNA binding
BP
regulation of transcription, DNA-templated
GO slim(3 items)
MF
nucleic acid binding
BP
transcription, DNA-templated
BP
regulation of biological process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.