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アセンブル , シーケンス , Assemble , Sequence , Hordeum vulgare subsp. spontaneum , Barley, Wild barley (ssp. spontaneum) , オオムギ, シジョウオオムギ, オオムギ野生種 (spontaneum亜種)

Hordeum vulgare

Genome Assembly ID:t4513.G001

Sequence Name:IBSC_v2

Details of the Assembled Genome Sequences

Assembly Name IBSC_v2 Biological Sample cv. Morex
Number of Sequences 10 Number of Chromosomes 2n = 2x = 14
Total Length (bp) 4,834,432,680 N50 Length (bp) 657,224,000
Number of Genes 236,301 Number of Genes Source File Hordeum_vulgare.IBSC_v2.pep.all.fa
Number of Genes Annotated by Hayai-annotation 236,301 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, 454 Read Depth 72x
Assembly Method Velvet v. 1.2.09, MIRA, CLC Assembly Cell v. 4.0.6, SOAPdenovo v. 2.01, ABySS v. 1.5.1, BWA mem v. 0.7.4, SSPACE v. 3.0 Standard Estimated Genome Size (Mb) 5,428
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Nils Stein (Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben), Robbie Waugh (The James Hutton Institute), Chengdao Li (Murdoch University), Guoping Zhang (Zhejiang University), Ilka Braumann (Carlsberg Research Laboratory), Manuel Spannagl (Helmholtz Center Munich - German Research Center for Environmental Health) Data Source Ensembl
DOI/PMID 10.1038/nature22043 Data Source URL http://plants.ensembl.org/index.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:95.4%[S:91.2%,D:4.2%],F:2.8%,M:1.8%,n:1614 BUSCO Gene (pep/cds) C:87.1%[S:14.0%,D:73.1%],F:2.9%,M:10.0%,n:1614

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