Sequence Name:Ragi PR202 v. 2.0
Assembly Name | Ragi PR202 v. 2.0 | Biological Sample | subsp. coracana, cv. PR202, IC number 479099 |
Number of Sequences | 1,196 | Number of Chromosomes | 2n = 4x = 36 |
Total Length (bp) | 1,229,373,533 | N50 Length (bp) | 23,885,297 |
Number of Genes | 57,180 | Number of Genes Source File | GCA_021604985.1_Ragi_PR202_v._2.0_protein.faa.gz |
Number of Genes Annotated by Hayai-annotation | 0 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Illumina, PacBio RS II, Bionano optical map | Read Depth | 140x (Illumina), 16x (PacBio) |
Assembly Method | Platanus v1.2.4, DBG2OLC, SSPACE v3.0, IrysSolve_ v2.1 | Estimated Genome Size (Mb) | 1,500 |
Sequencing Method Comments | NA | Comments | Hybrid de novo assembly |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Kentaro K Shimizu (University of Zurich) | Data Source | NCBI |
DOI/PMID | 10.1093/dnares/dsx036 | Data Source URL | https://www.ncbi.nlm.nih.gov/ |
BUSCO Version | BUSCO Dataset | ||
BUSCO Genome | BUSCO Gene (pep/cds) |