Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Camellia sinensis var. sinensis , Tea, Black tea, Chinese Oolong tea (var. sinensis) , チャ, チャノキ (sinensis変種)

Camellia sinensis

Genome Assembly ID:t4442.G007

Sequence Name:GWHBAUV00000000

Details of the Assembled Genome Sequences

Assembly Name GWHBAUV00000000 Biological Sample var. sinensis, cv. Huangdan (HD)
Number of Sequences 43 Number of Chromosomes 2n = 2x = 30
Total Length (bp) 5,879,548,707 N50 Length (bp) 213,387,167
Number of Genes 88,514 Number of Genes Source File GWHBAUV00000000.Protein.faa.gz
Number of Genes Annotated by Hayai-annotation 88,514 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio Sequel II, Hi-C Read Depth 18.67x (PacBio), 111.50x (Hi-C)
Assembly Method Hifiasm, ALLHiC, RaGOO v1.1 Estimated Genome Size (Mb) 2,940
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Naixing Ye (Fujian Agriculture and Forestry University/Key Laboratory of Tea Science in Universities of Fujian Province) Data Source Genome Warehouse
DOI/PMID 10.1038/s41438-021-00542-x Data Source URL https://bigd.big.ac.cn/gwh/
BUSCO Version 5.8.2 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.8%[S:13.2%,D:85.6%],F:0.9%,M:0.3%,n:1614 BUSCO Gene (pep/cds) C:84.3%[S:27.2%,D:57.1%],F:2.7%,M:13.0%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format