Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Camellia sinensis var. sinensis , Tea, Black tea, Chinese Oolong tea (var. sinensis) , チャ, チャノキ (sinensis変種)

Camellia sinensis

Genome Assembly ID:t4442.G002

Sequence Name:CSS_ChrLev_20200506

Details of the Assembled Genome Sequences

Assembly Name CSS_ChrLev_20200506 Biological Sample cv. Shuchazao
Number of Sequences 1,333 Number of Chromosomes 2n = 2x = 30
Total Length (bp) 2,938,757,831 N50 Length (bp) 167,113,155
Number of Genes 50,525 Number of Genes Source File CSS_ChrLev_20200506_PEP.fas
Number of Genes Annotated by Hayai-annotation 50,525 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBIO, Hi-C, Illumina, 10X Read Depth NA
Assembly Method Falcon, BWA, Pilon, LACHESIS Estimated Genome Size (Mb) 3,000
Sequencing Method Comments NA Comments Shuchazao is a diploid elite cultivar of C.sinensis var. sinensis, widely planted in Southeast China.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Xiaochun Wan (Anhui Agricultural University), Chaoling Wei (ditto) Data Source TPIA: Tea Plant Information Archive
DOI/PMID 10.1016/j.molp.2020.04.010 Data Source URL http://tpia.teaplant.org/index.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:96.4%[S:60.8%,D:35.6%],F:1.2%,M:2.4%,n:1614 BUSCO Gene (pep/cds) C:89.7%[S:55.1%,D:34.6%],F:4.5%,M:5.8%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format