Sequence Name:CSS_ChrLev_20200506
Assembly Name | CSS_ChrLev_20200506 | Biological Sample | cv. Shuchazao |
Number of Sequences | 1,333 | Number of Chromosomes | 2n = 2x = 30 |
Total Length (bp) | 2,938,757,831 | N50 Length (bp) | 167,113,155 |
Number of Genes | 50,525 | Number of Genes Source File | CSS_ChrLev_20200506_PEP.fas |
Number of Genes Annotated by Hayai-annotation | 50,525 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBIO, Hi-C, Illumina, 10X | Read Depth | NA |
Assembly Method | Falcon, BWA, Pilon, LACHESIS | Estimated Genome Size (Mb) | 3,000 |
Sequencing Method Comments | NA | Comments | Shuchazao is a diploid elite cultivar of C.sinensis var. sinensis, widely planted in Southeast China. |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Xiaochun Wan (Anhui Agricultural University), Chaoling Wei (ditto) | Data Source | TPIA: Tea Plant Information Archive |
DOI/PMID | 10.1016/j.molp.2020.04.010 | Data Source URL | http://tpia.teaplant.org/index.html |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:96.4%[S:60.8%,D:35.6%],F:1.2%,M:2.4%,n:1614 | BUSCO Gene (pep/cds) | C:89.7%[S:55.1%,D:34.6%],F:4.5%,M:5.8%,n:1614 |