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アセンブル , シーケンス , Assemble , Sequence , Solanum chacoense , Chaco potato, Wild potato , ジャガイモ野生種 (chacoense種)

Solanum chacoense

Genome Assembly ID:t4108.G001

Sequence Name:M6_v4.1_PM

Details of the Assembled Genome Sequences

Assembly Name M6_v4.1_PM Biological Sample M6
Number of Sequences 13 Number of Chromosomes 2n = 2x = 24
Total Length (bp) 867,067,562 N50 Length (bp) 49,944,156
Number of Genes 37,740 Number of Genes Source File pasa_m6.hc.gene_models.repr.pep.fa
Number of Genes Annotated by Hayai-annotation 37,740 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina HiSeq 2500 Read Depth NA
Assembly Method ALLPATHS遯カ莨クG (v.51828), GapCloser (v.1.12r6) Estimated Genome Size (Mb) 882
Sequencing Method Comments NA Comments M6 is a diploid inbred clone of the high遯カ霄ォlycoalkaloid遯カ螢ャroducing tuber遯カ閾」earing potato species Solanum chacoense.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author C. Robin Buell (Michigan State University) Data Source Spud DB Potato Genomics Resource
DOI/PMID 10.1111/tpj.13857 Data Source URL
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.8%[S:96.1%,D:2.7%],F:0.6%,M:0.6%,n:1614 BUSCO Gene (pep/cds) C:93.7%[S:90.8%,D:2.9%],F:4.2%,M:2.1%,n:1614

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