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Solanum lycopersicum

Assembly Name:SL3.00

Gene File:ITAG3.2_proteins.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
Solyc05g051040.3.1
PEP
Solyc05g051040.3.1
Position on the Genome Chromosome SL3.0ch05
Start Position 62075919
End Position 62081924
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01477544
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, RING-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
RING-type domain-containing protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF13639
Pfam Description Details
InterPro ID
IPR013083,IPR001841
InterPro Description Details
GO ID
GO:0016021,GO:0005774
GO Description Details
GOslim ID
GO:0005773,GO:0016020
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Solanum lycopersicum
Family Solanaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , cv. Heinz 1706 , Solanaceae , ナス科 , Solanum , ナス属 , Tomato, Cherry tomato , トマト, ミニトマト, マメトマト Tomato , トマト

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
RING-type domain-containing protein
OrthoDB(1 item)
124833at33090
Zinc finger, RING-type
Pfam(1 item)
 
Ring finger domain
InterPro(2 items)
 
Znf_RING/FYVE/PHD
 
Zinc finger, RING-type
Gene ontology(2 items)
CC
integral component of membrane
CC
vacuolar membrane
GO slim(2 items)

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.