Capsicum annuum| ID | Population Name | Line List | Variant Type |
Reference Sequence | Sequence Type | Variant Counts | Data Source | Comments | Download | TASUKE+ | JBrowse | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Table | Vcf file |
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|
t4072.SNP000001 |
Capsicum_annuum_SRA_24_lines_20191227 |
|
SNPs, In/dels |
WGS |
7,427,806 | Plant GARDEN |
Bwa/bcftools 1.9, (QUAL≥200, 10≤DP≤200, max-missing=0.7) |
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|
t4072.SNP000002 |
13 Capsicum lines |
|
SNPs |
WGS |
103,558,059 | Shirasawa et al. 2022 |
Bowtie2/bcftools 1.9, (QUAL≥20, 8≤DP≤25, max-missing=0.5, maf≥0.05) |
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