Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Capsicum annuum , Chilli pepper (annuum) , トウガラシ

Capsicum annuum

Genome Assembly ID:t4072.G003

Sequence Name:CAN_r1.2.pmol

Details of the Assembled Genome Sequences

Assembly Name CAN_r1.2.pmol Biological Sample cv. Takanotsume
Number of Sequences 12 Number of Chromosomes 2n = 2x = 24
Total Length (bp) 3,058,489,554 N50 Length (bp) 262,665,162
Number of Genes 105,249 Number of Genes Source File CAN_r1.2.pep.fasta
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio, BioNano, Genetic mapping Read Depth 20.8x
Assembly Method Hifiasm, BioNano Solve, ALLMAPS Estimated Genome Size (Mb) 3,168
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Kenta Shirasawa (Kazusa DNA Res Inst) Data Source Plant GARDEN
DOI/PMID Data Source URL https://plantgarden.jp/
BUSCO Version 3.0.2 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:96.5%[S:94.8%,D:1.7%],F:0.7%,M:2.8%,n:1375 BUSCO Gene (pep/cds) C:96.2%[S:88.3%,D:7.9%],F:2.2%,M:1.6%,n:1375

Search Genes

Gene data has not been registered.

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format