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アセンブル , シーケンス , Assemble , Sequence , Panicum virgatum , Switchgrass , スイッチグラス

Panicum virgatum

Genome Assembly ID:t38727.G001

Sequence Name:P.virgatum_v5

Details of the Assembled Genome Sequences

Assembly Name P.virgatum_v5 Biological Sample AP13
Number of Sequences 627 Number of Chromosomes 2n=4x=36,2n=6x=54,2n=8x=72
Total Length (bp) 1,129,997,604 N50 Length (bp) 64,346,616
Number of Genes 84,836 Number of Genes Source File GCF_016808335.1_P.virgatum_v5_protein.faa
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, PACBIO Read Depth 177.12x(Illumina), 83.42x(PacBio)
Assembly Method MECAT Estimated Genome Size (Mb) 1,200
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author John T.Lovell(Jerry Jenkins Genome Sequencing Center), Thomas E.Juenger(University of Texas at Austin), Jeremy Schmutz(Genome Sequencing Center, HudsonAlpha Institute for Biotechnology; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory) Data Source NCBI
DOI/PMID 10.1038/s41586-020-03127-1 Data Source URL https://www.ncbi.nlm.nih.gov/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.3%[S:13.3%,D:86.0%],F:0.4%,M:0.3%,n:1614 BUSCO Gene (pep/cds) C:99.8%[S:8.7%,D:91.1%],F:0.1%,M:0.1%,n:1614

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Gene data has not been registered.

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