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アセンブル , シーケンス , Assemble , Sequence , Arachis hypogaea , Cultivated Peanut , ラッカセイ, ナンキンマメ

Arachis hypogaea

Genome Assembly ID:t3818.G002

Sequence Name:Tifrunner.gnm2.J5K5

Details of the Assembled Genome Sequences

Assembly Name Tifrunner.gnm2.J5K5 Biological Sample cv. Tifrunner
Number of Sequences 442 Number of Chromosomes 2n = 4x = 40
Total Length (bp) 2,557,413,415 N50 Length (bp) 135,027,066
Number of Genes 67,150 Number of Genes Source File arahy.Tifrunner.gnm2.ann1.4K0L.protein_primaryTranscript.faa
Number of Genes Annotated by Hayai-annotation 67,150 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio, Illumina, Hi-C Read Depth 48.25x
Assembly Method MECAT v. 2017-07, Arrow v. 2017-07, Estimated Genome Size (Mb) NA
Sequencing Method Comments NA Comments The detail of the changes from version 1 to version 2 is described in README.J5K5.yml file and Arachis hypogaea cv. Tifrunner is a runner-type peanut (registration number CV-93, PI 644011) with resistance to several peanut diseases like the leaf spot and TSWV/spotted wilt.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author David J. Bertioli (University of Georgia), Scott A. Jackson (ditto), Jeremy Schmutz (HudsonAlpha Institute of Biotechnology) Data Source PeanutBase
DOI/PMID 10.1038/s41588-019-0405-z Data Source URL
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.1%[S:13.4%,D:85.7%],F:0.4%,M:0.5%,n:1614 BUSCO Gene (pep/cds) C:95.9%[S:10.4%,D:85.5%],F:0.9%,M:3.2%,n:1614

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Cut-Out Genome Sequences

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