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アセンブル , シーケンス , Assemble , Sequence , Fragaria x ananassa , Strawberry , イチゴ, オランダイチゴ

Fragaria x ananassa

Genome Assembly ID:t3747.G002

Sequence Name:Fragaria x ananassa Camarosa genome assembly v1.0

Details of the Assembled Genome Sequences

Sequence Name Fragaria x ananassa Camarosa genome assembly v1.0 Biological Sample cv. Camarosa
Number of Sequences 28 Number of Chromosomes 2n = 8x = 56
Total Length (bp) 805,488,706 N50 Length (bp) 27,809,139
Number of Genes 108,087 Number of Genes Source File Fxa_v1.2_makerStandard_proteins_woTposases_mod.fasta
Number of Genes Annotated by Hayai-annotation 108,087 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, 10X, PacBio Read Depth 615x
Assembly Method DenovoMAGIC3, HiRise pipeline, PBJelly Estimated Genome Size (Mb) 813
Sequencing Method Comments Comments
DOI/PMID 10.1038/s41588-019-0356-4 Corresponding author Patrick P. Edger (Michigan State University), Steven J. Knapp (University of California–Davis)
Data Source GDR: Genome Database For Rosaceae Data Source URL https://www.rosaceae.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.4%[S:4.2%,D:95.2%],F:0.2%,M:0.4%,n:1614 BUSCO Gene (pep/cds) C:97.4%[S:9.1%,D:88.3%],F:0.9%,M:1.7%,n:1614

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