Sequence Name:ChineseLong_genome_v3
Assembly Name | ChineseLong_genome_v3 | Biological Sample | var. sativus, cv. Chinese Long, inbred line 9930 |
Number of Sequences | 85 | Number of Chromosomes | 2n = 2x = 14 |
Total Length (bp) | 226,211,662 | N50 Length (bp) | 31,125,843 |
Number of Genes | 24,317 | Number of Genes Source File | ChineseLong_pep_v3.fa |
Number of Genes Annotated by Hayai-annotation | 24,317 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio, 10X, Hi-C | Read Depth | 195.5x |
Assembly Method | CANU 1.7, Pilon, FALCON | Estimated Genome Size (Mb) | NA |
Sequencing Method Comments | NA | Comments | 9930 is a highly inbred line. |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Zhonghua Zhang ( Chinese Academy of Agricultural Sciences) | Data Source | CuGenDB |
DOI/PMID | 10.1093/gigascience/giz072 | Data Source URL | http://cucurbitgenomics.org/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:98.6%[S:97.1%,D:1.5%],F:0.5%,M:0.9%,n:1614 | BUSCO Gene (pep/cds) | C:95.4%[S:93.9%,D:1.5%],F:2.5%,M:2.1%,n:1614 |