Plant GARDEN How To ▶︎



アセンブル , シーケンス , Assemble , Sequence , Cucumis sativus var. sativus , Cucumber (var. sativus) , キュウリ (sativus変種)

Cucumis sativus

Genome Assembly ID:t3659.G001

Sequence Name:ASM407v2

Details of the Assembled Genome Sequences

Assembly Name ASM407v2 Biological Sample var. sativus, cv. Chinese Long, inbred line 9930
Number of Sequences 186 Number of Chromosomes 2n = 2x = 14
Total Length (bp) 193,829,320 N50 Length (bp) 29,076,228
Number of Genes 23,780 Number of Genes Source File Cucumis_sativus.ASM407v2.pep.all.fa
Number of Genes Annotated by Hayai-annotation 23,780 Hayai-Annotation Version zen_v2.0
Sequencing Method Sanger, Illumina Read Depth 72.2x
Assembly Method SOAPdenovo v. 1.04 Estimated Genome Size (Mb) 350
Sequencing Method Comments NA Comments 9930 is a highly inbred line.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Yongchen Du (Chinese Academy of Agricultural Sciences), Sanwen Huang (ditto), Jun Wang (BGI-Shenzhen), Songgang Li (ditto): Kui Lin(Beijing Normal University) Data Source Ensembl
DOI/PMID 10.1038/ng.475:10.1186/1471-2164-12-540 Data Source URL
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.3%[S:97.5%,D:0.8%],F:0.6%,M:1.1%,n:1614 BUSCO Gene (pep/cds) C:92.0%[S:91.3%,D:0.7%],F:4.8%,M:3.2%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Start Position
End Position
Complementary Strand