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SNP , Variant , バリアント , 多型 , Theobroma cacao , Cacao , カカオ

Theobroma cacao
ID Population Name Line List Variant
Type
Reference Sequence Sequence Type Variant Counts Data Source Comments Download TASUKE+ JBrowse
Table Vcf
file

t3641.SNP000001

Theobroma_cacao_SRA_100_lines_20201005

SNPs, In/dels

Theobroma_cacao_criollo_chr.v2.0

WGS

10,148,204

Plant GARDEN

Bwa/bcftools 1.9, (QUAL≥200, 10≤DP≤200, max-missing=0.7)