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アセンブル , シーケンス , Assemble , Sequence , Gossypium hirsutum , Upland cotton , ワタ (hirsutum種), キヌワタ

Gossypium hirsutum

Genome Assembly ID:t3635.G001

Sequence Name:TM-1_V2.1

Details of the Assembled Genome Sequences

Assembly Name TM-1_V2.1 Biological Sample Texas Marker-1, TM-1
Number of Sequences 12,098 Number of Chromosomes 2n = 4x = 52
Total Length (bp) 2,298,437,019 N50 Length (bp) 107,588,319
Number of Genes 72,761 Number of Genes Source File TM-1_V2.1.gene.pep.fa
Number of Genes Annotated by Hayai-annotation 72,761 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina Read Depth NA
Assembly Method DeNovoMAGIC3, BioNano, Hi-C, and POPSEQ Estimated Genome Size (Mb) 2,340
Sequencing Method Comments NA Comments An inbred line
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Tianzhen Zhang (Zhejiang University) Data Source COTTON GEN
DOI/PMID 10.1038/s41588-019-0371-5 Data Source URL https://www.cottongen.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.4%[S:6.9%,D:92.5%],F:0.3%,M:0.3%,n:1614 BUSCO Gene (pep/cds) C:97.7%[S:7.2%,D:90.5%],F:0.1%,M:2.2%,n:1614

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