Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Mangifera indica , Mango , マンゴー

Mangifera indica

Genome Assembly ID:t29780.G001

Sequence Name:Mindica_2.1

Details of the Assembled Genome Sequences

Assembly Name Mindica_2.1 Biological Sample Alphonso
Number of Sequences 250 Number of Chromosomes 2n = 2x = 40
Total Length (bp) 391,961,648 N50 Length (bp) 17,652,500
Number of Genes 52,078 Number of Genes Source File GCF_011075055.1_CATAS_Mindica_2.1_protein.faa
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio Sequel II Platform Read Depth 240.0x
Assembly Method Canu v.1.8 Estimated Genome Size (Mb) 360
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Peng Wang(Chinese Academy of Tropical Agricultural Sciences ), Songnian Hu(Chinese Academy of Sciences), Yeyuan Chen(Hainan University) Data Source NCBI
DOI/PMID 10.1186/s13059-020-01959-8 Data Source URL https://www.ncbi.nlm.nih.gov/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.9%[S:82.7%,D:16.2%],F:0.6%,M:0.5%,n:1614 BUSCO Gene (pep/cds) C:99.7%[S:50.3%,D:49.4%],F:0.2%,M:0.1%,n:1614

Search Genes

Gene data has not been registered.

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format