Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Dioscorea cayenensis subsp. rotundata , Guinea yam (ssp. rotundata) , ギニアヤム (rotundata変種)

Dioscorea cayenensis

Genome Assembly ID:t29710.G001

Sequence Name:TDr96_F1_Pseudo_Chromosome_v1.0

Details of the Assembled Genome Sequences

Assembly Name TDr96_F1_Pseudo_Chromosome_v1.0 Biological Sample subsp. rotundata, cv. TDr96_F1
Number of Sequences 21 Number of Chromosomes 2n = 2x = 40
Total Length (bp) 456,674,974 N50 Length (bp) 25,272,979
Number of Genes 19,023 Number of Genes Source File Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.pep.all.fa
Number of Genes Annotated by Hayai-annotation 19,023 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina Read Depth 100x
Assembly Method Allpaths-LG v. r49856, SSPACE Premium v. 2.3 Estimated Genome Size (Mb) 580
Sequencing Method Comments NA Comments Synonym: Dioscorea rotundata
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Hiroko Takagi (Japan International Research Center for Agricultural Sciences), Robert Asiedu (International Institute of Tropical Agriculture), Ryohei Terauchi (Iwate Biotechnology Research Center) Data Source Ensembl
DOI/PMID 10.1186/s12915-017-0419-x Data Source URL http://plants.ensembl.org/index.html
BUSCO Version BUSCO Dataset
BUSCO Genome BUSCO Gene (pep/cds)

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format