Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Vitis hybrid cultivar , Hybrid grape , ブドウ交配種, ハイブリッドブドウ

Vitis hybrid cultivar

Genome Assembly ID:t241073.G001

Sequence Name:V_Chambourcin_primary_genome_assembly

Details of the Assembled Genome Sequences

Assembly Name V_Chambourcin_primary_genome_assembly Biological Sample cv. Chambourcin
Number of Sequences 26 Number of Chromosomes NA
Total Length (bp) 493,554,689 N50 Length (bp) 23,325,629
Number of Genes 33,791 Number of Genes Source File V_Chambourcin_primary_genome_assembly_protein_sequences.fasta.gz
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio Sequel II, BioNano optical map, Illumina Read Depth 28x (PacBio), 188.70x (Bionano), 40x (Illuminna)
Assembly Method Hifiasm v0.13-r308, Bionano Solve v3.5.1, bowtie2 v2.3.4, samtools v1.9, minimap2 v2.17 Estimated Genome Size (Mb) NA
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Allison Miller (Saint Louis University) Data Source Figshare
DOI/PMID 10.46471/gigabyte.84 Data Source URL https://figshare.com
BUSCO Version BUSCO Dataset
BUSCO Genome BUSCO Gene (pep/cds)

Search Genes

Gene data has not been registered.

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format