Sequence Name:PitayaGenomic
Assembly Name | PitayaGenomic | Biological Sample | Guanhuabai |
Number of Sequences | 871 | Number of Chromosomes | 2n = 2x = 22 |
Total Length (bp) | 1,387,322,347 | N50 Length (bp) | 127,145,692 |
Number of Genes | 277,350 | Number of Genes Source File | PitayaGenomic.protein.gz |
Number of Genes Annotated by Hayai-annotation | 0 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio, Illumina, Hi-C, 10X Genomics | Read Depth | 113.23x(PacBio), 150.62(10x Genomics), 111.90x(Hi-C) |
Assembly Method | FALCON version 0.2.2 | Estimated Genome Size (Mb) | 1,580 |
Sequencing Method Comments | 7 paired-end genome sequencing reads of 250bp to 10kb inserts were processed and loaded onto the Illumina HiSeq x 10 platforms for sequencing. | Comments | Synonym: Hylocereus undatus |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Yong-hua Qin (South China Agricultural University) | Data Source | Pitaya genome website |
DOI/PMID | 10.1038/s41438-021-00612-0 | Data Source URL | http://www.pitayagenomic.com/download.php |
BUSCO Version | BUSCO Dataset | ||
BUSCO Genome | BUSCO Gene (pep/cds) |