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アセンブル , シーケンス , Assemble , Sequence , Coffea arabica , Arabica coffee , コーヒー アラビカ種

Coffea arabica

Genome Assembly ID:t13443.G001

Sequence Name:Cara_1.0

Details of the Assembled Genome Sequences

Assembly Name Cara_1.0 Biological Sample cv. Caturra red, isolate CCC135-36
Number of Sequences 2,833 Number of Chromosomes 2n = 4x = 44
Total Length (bp) 1,094,446,607 N50 Length (bp) 42,465,768
Number of Genes 67,222 Number of Genes Source File GCF_003713225.1_Cara_1.0_protein.faa
Number of Genes Annotated by Hayai-annotation 67,222 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, PacBio, 10X Read Depth 160.0x
Assembly Method MaSuRCA v. 3.2.4; FALCON-Unzip v. 0.9 Estimated Genome Size (Mb) 1,300
Sequencing Method Comments NA Comments cv. Caturra red, isolate CCC135-36
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author NA Data Source NCBI
DOI/PMID Direct submission Data Source URL https://www.ncbi.nlm.nih.gov/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:97.4%[S:37.2%,D:60.2%],F:0.9%,M:1.7%,n:1614 BUSCO Gene (pep/cds) C:98.2%[S:18.0%,D:80.2%],F:0.6%,M:1.2%,n:1614

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