Coffea arabica| Assembly Name | Biological Sample | Assembly Level | Annotation (gff / gff3) |
Gene (cds / gene) |
Hayai Annotation ZEN |
Transcripts (cDNA / mRNA) |
Amino Acid (pep / aa) |
Download | JBrowse | Comments |
|---|---|---|---|---|---|---|---|---|---|---|
cv. Caturra red, isolate CCC135-36 |
Chromosome |
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cv. Caturra red, isolate CCC135-36 |
Sequence Type |
Biological Sample | Sequence Name | Accession | JBrowse | Comments | |||
|---|---|---|---|---|---|---|---|---|
Cara_1.0 |
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Whole Genome Sequence (Short Read) |
High Trigonelline DNA Bulk sample B4 |
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phenotype:High Trigonneline; sample:Seleccion Geisha (4-4)(205928):Castaner Puerto Rico x 53632, Purpurascens Brazil x 47127, No. 4 Etiopia x 48989, Geisha VC-496, Local Bronza 8, M-7817, Surinam, E-46, Kents Ceylon x 48705, E-511, Cubujuqui o San Joaquin, E-67, E-146, E-189, Purpurascens, Seleccion 353 4/5 CRRC 35/9, Columnaris, Maragogipe amarillo |
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Whole Genome Sequence (Short Read) |
Low Trigonneline DNA Bulk sample B3 |
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phenotype:Low Trigonneline; sample:ET47, E-232, Limnu E-171, Mibirizi 49-1848, E-305, L-334 ET45 C7, ET02, Catuai rojo UFV 2197/194 CH 2077/2 5-72, Catuai amarillo ufv 1117/244 fepnch 2077, Catimor UFV 2326 19/1 caturra x 832/1 Hibrido de B-61813 Timor, Mibirizi No.49: Belgian Congo x 51149, Catuai rojo, E-529, Series L, C-68-1.7-33 Seleccion 31, KP-228, E-301, H-66 self tree 875 |
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Whole Genome Sequence (Short Read) |
High Caffeine DNA Bulk sample B2 |
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phenotype:High Caffeine; sample:E-356, E-358, E-189, Lejeune 15 line 0144 Zona Strada Bandera ovest x 48849, Icatu: Mundo Novo x (Robusta x Bourbon rojo) x Caturra, Ennarea E-350, E-495, E-510, E-46, E-482, Seleccion 353 4/5 CRRC 35/9, ET-59, E-146, E-437, E-508, Babbaka, No. 31 Etiopia x 48989, Mibirizi No.49, Belgian Congo x 51149 |
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Whole Genome Sequence (Short Read) |
Low Caffeine DNA Bulk sample B1 |
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phenotype:Low Caffeine; sample:Laurina 1, E-232, E-190, Mibirizi 49-1848, Laurina 2, Geisha Castaner: Puerto Rico x 54375, S.L 34, Jackson 2, Maragogipe, Series L, Zeghie Etiopia x 62275, H-66 self tree 875, Geisha VC-496, Dessie, E-524, E-540, E-549, C-68-1.7-33, Seleccion 31 |
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Whole Genome Sequence (Short Read) |
Deren 3 |
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Whole Genome Sequence (Short Read) |
397 |
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Whole Genome Sequence (Short Read) |
399 |
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Whole Genome Sequence (Short Read) |
396 |
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Whole Genome Sequence (Short Read) |
400 |
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Whole Genome Sequence (Short Read) |
403 |
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Whole Genome Sequence (Short Read) |
MOXICO |
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Whole Genome Sequence (Short Read) |
D157 |
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Whole Genome Sequence (Short Read) |
Costarica 1 |
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Whole Genome Sequence (Short Read) |
MOXICO-10 |
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Whole Genome Sequence (Short Read) |
SL28 |
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Whole Genome Sequence (Short Read) |
kent |
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Whole Genome Sequence (Short Read) |
SL34 |
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Whole Genome Sequence (Short Read) |
162 |
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Whole Genome Sequence (Short Read) |
Brasil Ica |
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Whole Genome Sequence (Short Read) |
Ica |
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Whole Genome Sequence (Short Read) |
Deren 105 |
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Whole Genome Sequence (Short Read) |
164 |
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Whole Genome Sequence (Short Read) |
CCC24 |
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Whole Genome Sequence (Short Read) |
P4 |
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Whole Genome Sequence (Short Read) |
Villa Sarchi |
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Whole Genome Sequence (Short Read) |
P1 |
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Whole Genome Sequence (Short Read) |
DR168 |
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Whole Genome Sequence (Short Read) |
DTAR 363 |
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Whole Genome Sequence (Short Read) |
370 |
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Whole Genome Sequence (Short Read) |
Typica |
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Whole Genome Sequence (Short Read) |
MOXICO 13 |
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Whole Genome Sequence (Short Read) |
T5175 |
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Whole Genome Sequence (Short Read) |
161 |
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Whole Genome Sequence (Short Read) |
T8667 |
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Whole Genome Sequence (Short Read) |
165 |
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Whole Genome Sequence (Short Read) |
296 |
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Whole Genome Sequence (Short Read) |
P2 |
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Whole Genome Sequence (Short Read) |
NY02 |
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Whole Genome Sequence (Short Read) |
167 |
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Whole Genome Sequence (Short Read) |
P5 |
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Whole Genome Sequence (Short Read) |
166 |
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Whole Genome Sequence (Short Read) |
paca |
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Whole Genome Sequence (Short Read) |
Geisha |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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Whole Genome Sequence (Short Read) |
Red Bourbon |
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