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アセンブル , シーケンス , Assemble , Sequence , Saccharum hybrid cultivar , Sugarcane , サトウキビ栽培種

Saccharum hybrid cultivar

Genome Assembly ID:t128810.G007

Sequence Name:SosHAh1v1

Details of the Assembled Genome Sequences

Assembly Name SosHAh1v1 Biological Sample Haruno-Ougi
Number of Sequences 865 Number of Chromosomes 2n = 10X = 96
Total Length (bp) 4,815,303,113 N50 Length (bp) 83,150,438
Number of Genes 239,594 Number of Genes Source File SosHAh1v1.pep.fa
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio Hifi, Omni-C Read Depth 27X
Assembly Method Hifiasm, YaHS Estimated Genome Size (Mb) 10,000
Sequencing Method Comments Comments Hap1
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Sachiko Isobe (Kazusa DNA Res Inst, University of Tokyo) Data Source Plant GARDEN
DOI/PMID in preparation Data Source URL https://plantgarden.jp/
BUSCO Version 5.8.2 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.6%[S:0.7%,D:98.9%],F:0.1%,M:0.2%,n:1614 BUSCO Gene (pep/cds) C:99.4%[S:1.5%,D:97.8%],F:0.3%,M:0.3%,n:1614

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Gene data has not been registered.

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