Plant GARDEN
Solanum lycopersicum

Genome Assembly ID:t4081.G001

Sequence Name:SL3.0

Details of the Assembled Genome Sequences

Scientific Name Solanum lycopersicum
Sequence Name SL3.0
Biological Sample Heinz 1706
Assembly Level Chromosome
Number of Sequences 13
Number of Chromosomes 2n=24
Total Length (bp) 828,076,956
N50 Length (bp) 66,723,567
Sequencing Method "Sanger, Illumina"
Sequencing Method Comments NA
Read Depth 27x
Assembly Method "Newbler v. v2.3, BioNano Irysview v. v2.3"
Estimated Genome Size (Mb) 950
Submitter Solanaceae Genomics Project
DOI 10.1007/s00122-005-0107-z
Comments NA

Search Genes



Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand

Other Sequences

Sequence Type File Name Download Comment

Gene (cds / gene)

ITAG3.2_CDS.fasta.gz

genome

S_lycopersicum_chromosomes.3.00.fa.tar.gz

Annotation (gff / gff3)

ITAG3.2_gene_models.gff.gz

Hayai Annotation ZEN

hayai_annotation_zen_PlantGARDEN_Kegg.tsv.gz

Amino Acid (pep / aa)

ITAG3.2_proteins.fasta.gz

Transcript (cDNA / mRNA)

ITAG3.2_cDNA.fasta.gz

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