Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d054079_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:4:245974145:245978028:-1 gene:Zm00001d054079 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:embryo defective 14 description: embryo defective 14
Sequence

ATGGCGTCACCGCACCTTCCTTTCCTCTCCTTCCCCAAAACATTACCGCCGCTACCTCCC
CCACTCAAGACCCACGCCCACCGCACCTCCCTAGCCGCCGCTCCTGCTCCGCCGCCCGCC
CCGCCTGACGGCGCGGGGCCCGCCGCGCCCACGCGTGGGGACCGCTTCCTCGGCCGCCAG
CTGGCCACCGAGGCCGCCGCGCGCGTGCTCGCGCCCGAGGACGCCGACAGGCGGCGCCGA
CGCAAGGAGAAGCGCCGGGCCTTGGCACGGAAGCCCTCCGGCCTCGCATCCTGCTACGGC
TGCGGCGCCCCGCTGCAGACGGCGGAGGAGGCCGCGCCGGGATACGTCGACCCGGACACG
TACCAACTGAAGAAGAGGCATCACCAACTTAGAACCGTTCTATGTGGGAGGTGCAAGCTG
CTGTCTCATGGCCACATGGTTACTGCTGTTGGTGGCCACGGCGGTTATCCAGGGGGCAAG
AAGTTTGTTTCTGCGGAACAGCTCAGGGAGAAGCTGTCATACCTCCGTCACGAGAAAGCG
CTCATAGTCAAATTGGTTGACATCGTTGACTTCAATGGAAGTTTCCTGGCACGTGTACGC
GATTTTGCTGGTGCTAATCCTATTATACTTGTGATAACAAAGGTTGATCTCCTTCCCAGA
GATACTGATTTGAATTGTATAGGCGACTGGGTTGTCGAGTCAGTTGTCAAGAAGAAGCTT
AACGTCCTTAGTGTCCATTTGACAAGCTCAAAGTCATTGGTCGGTATCACAGGGGTTATA
TCAGAGATTCATCAGGAAAGGAAGGGCCGAGATGTATATATACTGGGTTCCGCAAATGTT
GGAAAATCTGCATTTATCAGTGCAATGCTAAGAACAATGGCGTACAAGGACCCGGTAGCA
GCGGCAGCTCAAAAATACAAGCCAATACAGTCTGCTGTTCCTGGAACAACCCTTGGCCCT
ATTCAAATTGAAGCATTTTTAGGCGGAGGGAAATTGTATGATACACCTGGAGTCCACCTT
CACCATAGGCAGGCAGCAGTTATCCATGCTGATGATCTGCCTTCTCTTGCACCACAAAGT
CGTTTGAAAGGGCGATGTTTTCCGGCTAATGATACAGATGTTGAATTGAGCGGGAATTCA
TTGTTCTGGGCTGGGCTAGTCCGCATTGATGTTATCAAGGCTCTTCCACGTTCACGGCTG
ACATTCTATGGGCCCAAGAAGCTAAAGATTAATATGGTCCCGACAACAGAAGCTGATCAA
TTTTACGAGACTGAAGTTGGGGTCACATTGACTCCGCCAACTGGTAAGGAGAGAGCTGAA
GGATGGACAGGGCTTCAAGGGGTTCGCGAGTTGAAGATAAAATATGAGGAACGTGACAGG
CCTGCCTGTGACATCGCGATCTCTGGGCTTGGGTGGATTTCTGTGGAGCCATCAGGTGTG
CCTTCAAACAGCGCTGAGGAAGTTTATGATGGCGGTGAGCTGCATCTGGTGGTACATGTG
CCCAAACCGGTTGAGGTCTTCATGCGTCCTCCATTACCTGTCGGCAAAGCAGCGTCGCAA
TGGTACCGGTATCAAGAGCTGACAGAGGAAGAAGAGGAGCTGAGGCCTAAATGGCATTAC
TGA

Peptide Sequence

PEP ID

Zm00001d054079_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:4:245974145:245978028:-1 gene:Zm00001d054079 transcript:Zm00001d054079_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:embryo defective 14 description: embryo defective 14
Sequence

MASPHLPFLSFPKTLPPLPPPLKTHAHRTSLAAAPAPPPAPPDGAGPAAPTRGDRFLGRQ
LATEAAARVLAPEDADRRRRRKEKRRALARKPSGLASCYGCGAPLQTAEEAAPGYVDPDT
YQLKKRHHQLRTVLCGRCKLLSHGHMVTAVGGHGGYPGGKKFVSAEQLREKLSYLRHEKA
LIVKLVDIVDFNGSFLARVRDFAGANPIILVITKVDLLPRDTDLNCIGDWVVESVVKKKL
NVLSVHLTSSKSLVGITGVISEIHQERKGRDVYILGSANVGKSAFISAMLRTMAYKDPVA
AAAQKYKPIQSAVPGTTLGPIQIEAFLGGGKLYDTPGVHLHHRQAAVIHADDLPSLAPQS
RLKGRCFPANDTDVELSGNSLFWAGLVRIDVIKALPRSRLTFYGPKKLKINMVPTTEADQ
FYETEVGVTLTPPTGKERAEGWTGLQGVRELKIKYEERDRPACDIAISGLGWISVEPSGV
PSNSAEEVYDGGELHLVVHVPKPVEVFMRPPLPVGKAASQWYRYQELTEEEEELRPKWHY

Transcript Sequence

Transcript ID

Zm00001d054079_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:245974145:245978028:-1 gene:Zm00001d054079 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:embryo defective 14 description: embryo defective 14
Sequence

CCGTCCGTCCCTTCCGTTGCGCCGGCCCGGATAAGGTAAGGAGAGGATACCTTCACTGCT
CTGCGGCTGCTCCGCCACGCCGCCGTCCATCGTCCATCGTCCATGGCGTCACCGCACCTT
CCTTTCCTCTCCTTCCCCAAAACATTACCGCCGCTACCTCCCCCACTCAAGACCCACGCC
CACCGCACCTCCCTAGCCGCCGCTCCTGCTCCGCCGCCCGCCCCGCCTGACGGCGCGGGG
CCCGCCGCGCCCACGCGTGGGGACCGCTTCCTCGGCCGCCAGCTGGCCACCGAGGCCGCC
GCGCGCGTGCTCGCGCCCGAGGACGCCGACAGGCGGCGCCGACGCAAGGAGAAGCGCCGG
GCCTTGGCACGGAAGCCCTCCGGCCTCGCATCCTGCTACGGCTGCGGCGCCCCGCTGCAG
ACGGCGGAGGAGGCCGCGCCGGGATACGTCGACCCGGACACGTACCAACTGAAGAAGAGG
CATCACCAACTTAGAACCGTTCTATGTGGGAGGTGCAAGCTGCTGTCTCATGGCCACATG
GTTACTGCTGTTGGTGGCCACGGCGGTTATCCAGGGGGCAAGAAGTTTGTTTCTGCGGAA
CAGCTCAGGGAGAAGCTGTCATACCTCCGTCACGAGAAAGCGCTCATAGTCAAATTGGTT
GACATCGTTGACTTCAATGGAAGTTTCCTGGCACGTGTACGCGATTTTGCTGGTGCTAAT
CCTATTATACTTGTGATAACAAAGGTTGATCTCCTTCCCAGAGATACTGATTTGAATTGT
ATAGGCGACTGGGTTGTCGAGTCAGTTGTCAAGAAGAAGCTTAACGTCCTTAGTGTCCAT
TTGACAAGCTCAAAGTCATTGGTCGGTATCACAGGGGTTATATCAGAGATTCATCAGGAA
AGGAAGGGCCGAGATGTATATATACTGGGTTCCGCAAATGTTGGAAAATCTGCATTTATC
AGTGCAATGCTAAGAACAATGGCGTACAAGGACCCGGTAGCAGCGGCAGCTCAAAAATAC
AAGCCAATACAGTCTGCTGTTCCTGGAACAACCCTTGGCCCTATTCAAATTGAAGCATTT
TTAGGCGGAGGGAAATTGTATGATACACCTGGAGTCCACCTTCACCATAGGCAGGCAGCA
GTTATCCATGCTGATGATCTGCCTTCTCTTGCACCACAAAGTCGTTTGAAAGGGCGATGT
TTTCCGGCTAATGATACAGATGTTGAATTGAGCGGGAATTCATTGTTCTGGGCTGGGCTA
GTCCGCATTGATGTTATCAAGGCTCTTCCACGTTCACGGCTGACATTCTATGGGCCCAAG
AAGCTAAAGATTAATATGGTCCCGACAACAGAAGCTGATCAATTTTACGAGACTGAAGTT
GGGGTCACATTGACTCCGCCAACTGGTAAGGAGAGAGCTGAAGGATGGACAGGGCTTCAA
GGGGTTCGCGAGTTGAAGATAAAATATGAGGAACGTGACAGGCCTGCCTGTGACATCGCG
ATCTCTGGGCTTGGGTGGATTTCTGTGGAGCCATCAGGTGTGCCTTCAAACAGCGCTGAG
GAAGTTTATGATGGCGGTGAGCTGCATCTGGTGGTACATGTGCCCAAACCGGTTGAGGTC
TTCATGCGTCCTCCATTACCTGTCGGCAAAGCAGCGTCGCAATGGTACCGGTATCAAGAG
CTGACAGAGGAAGAAGAGGAGCTGAGGCCTAAATGGCATTACTGATGCTGCTCTGTTTCT
CTAGGGCTGGCTCTAGCAGTAGTACAGATTTCTGTAATCCAAATATTTAGCAGAGTGTTA
GGACCTGGTGATGAAATGGATTCAGAAAACAAGTTTTGAATAAATCTGTCTCTGGTGGTG
TCTATTTAGCACTTTGCTTTGGCATGAGGAAAGAGGAATCCTCCCATGTCCTGCACATGT
ACTCGGAATGAAGGACCTTCCAGACAAGGTATTGAAGAGATTTACCAATTTAATTTCGGC
AACAAAA